Pairwise Alignments

Query, 296 a.a., spermidine/putrescine ABC transporter permease from Pseudomonas fluorescens FW300-N2E3

Subject, 264 a.a., spermidine/putrescine ABC transporter permease PotC from Escherichia coli ECRC100

 Score =  176 bits (446), Expect = 5e-49
 Identities = 88/235 (37%), Positives = 155/235 (65%), Gaps = 8/235 (3%)

Query: 17  FIYMPMLILVIYSFNASKLVTVWGGWSVKWYVGLLDNTQLMGSVVRSLEIACYTAVAAVA 76
           ++Y+P++IL++ SFN+S+    W G++ KWY  L++N  L+ +   SL +A ++A  A  
Sbjct: 17  YLYIPIIILIVNSFNSSRFGINWQGFTTKWYSLLMNNDSLLQAAQHSLTMAVFSATFATL 76

Query: 77  LGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVITGLSLLLLFVAMAQMIGWPQERGIV 136
           +G+L A  L R  RF+G+    G++   ++ P+++  +SLL+LF+ +   +G+       
Sbjct: 77  IGSLTAVALYRY-RFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGF------W 129

Query: 137 TIWIAHTTFCAAYVAVVVSARLRELDLSIEEAAMDLGARPWKVFFLITIPMIAPSLAAGG 196
           ++  +H TFC  +V V V +RL+  D+ + EAA DLGA  + +   I +P+  P++AAG 
Sbjct: 130 SLLFSHITFCLPFVVVTVYSRLKGFDVRMLEAAKDLGASEFTILRKIILPLAMPAVAAGW 189

Query: 197 MMSFALSLDDLVLASFVSGPGSTTLPMEVFSAVRLGVKPEINAVASLILLAVSIV 251
           ++SF LS+DD+V++SFV+GP    LP++++S V++GV PE+NA+A+ ILL +S+V
Sbjct: 190 VLSFTLSMDDVVVSSFVTGPSYEILPLKIYSMVKVGVSPEVNALAT-ILLVLSLV 243



 Score = 23.9 bits (50), Expect = 0.004
 Identities = 32/122 (26%), Positives = 49/122 (40%), Gaps = 31/122 (25%)

Query: 3   RFRFSSLMLVLGLLFIYM--PMLILVIYSFNASKLVTV-WGGWSVKW--------YVGLL 51
           R+RF     V G+LF+ M  P +++ I       L+ +  G WS+ +        +V + 
Sbjct: 87  RYRFRGKPFVSGMLFVVMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVT 146

Query: 52  DNTQLMGSVVRSLEIACYTAVAAVALGTLAAFVLTRVTRFKGRTLFGGLVTAPLVMPEVI 111
             ++L G  VR LE       AA  LG     +L +             +  PL MP V 
Sbjct: 147 VYSRLKGFDVRMLE-------AAKDLGASEFTILRK-------------IILPLAMPAVA 186

Query: 112 TG 113
            G
Sbjct: 187 AG 188