Pairwise Alignments

Query, 1229 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas fluorescens FW300-N2E3

Subject, 1180 a.a., exonuclease V (RecBCD complex), beta subunit from Escherichia coli BL21

 Score =  798 bits (2060), Expect = 0.0
 Identities = 515/1234 (41%), Positives = 706/1234 (57%), Gaps = 99/1234 (8%)

Query: 9    LAFPLRGSQLIEASAGTGKTFTISALYLRLVLGHGDESAGFGRELLPPQILVVTFTDAAT 68
            L  PL+G +LIEASAGTGKTFTI+ALYLRL+LG G  SA F R L   ++LVVTFT+AAT
Sbjct: 11   LRLPLQGERLIEASAGTGKTFTIAALYLRLLLGLGG-SAAFPRPLTVEELLVVTFTEAAT 69

Query: 69   KELRERIRTRLAEAARFFRDET---PAPDSLIAELRGQFSPEQWSGCANRLDIAAQWMDE 125
             ELR RIR+ + E       ET   P  + L+ E+  +    QW      L +A + MDE
Sbjct: 70   AELRGRIRSNIHELRIACLRETTDNPLYERLLEEIDDKAQAAQW------LLLAERQMDE 123

Query: 126  AAVSTIHSWCQRMLREHAFDSGSLFTQTLEVDHSNLLGEVLRDYWRLFCYPMQGDALNWV 185
            AAV TIH +CQRML  +AF+SG LF Q L  D S L  +   D+WR  CYP+  +    V
Sbjct: 124  AAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVV 183

Query: 186  RSHWGGPAALLSRVRGLFASERDSAEGKEPAELITECLQARRDALLE-LKAPWRQWAQEL 244
               W GP ALL  +      E    +   P +       A+  A ++ +K  WR    EL
Sbjct: 184  FETWKGPQALLRDINRYLQGEAPVIKAPPPDDETLASRHAQIVARIDTVKQQWRDAVGEL 243

Query: 245  REICLQGVASKSVDGRKMQARYFEPWFEKICTWAEDDGLEQLDIGTGFNRLTPDGMAEAW 304
              +    + S  +D RK        W +KI  WAE++      +     + +   + +  
Sbjct: 244  DAL----IESSGIDRRKFNRSNQAKWIDKISAWAEEE-TNSYQLPESLEKFSQRFLEDRT 298

Query: 305  K--GQAPSHPGLDAMSGLKASLDALPTPDAAVLKHAAQWVGARFEEEKRRRAEMGFDDML 362
            K  G+ P HP  +A+  L A  + L   D  + +  A+ +      EKRRR E+GFDDML
Sbjct: 299  KAGGETPRHPLFEAIDQLLA--EPLSIRDLVITRALAE-IRETVAREKRRRGELGFDDML 355

Query: 363  LRLDAALRAEGGERLATLIREQFPVALIDEFQDTDPVQYWIFESIYRIEDNNPECGLFLI 422
             RLD+ALR+E GE LA  IR +FPVA+IDEFQDTDP QY IF  I+    + PE  L LI
Sbjct: 356  SRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQQYRIFRRIWH---HQPETALLLI 412

Query: 423  GDPKQAIYAFRGADIYTYLRARQATSGRLHTLGTNFRSSHGMVDAVNHVFQRAEAREQGR 482
            GDPKQAIYAFRGADI+TY++AR       +TL TN+RS+ GMV++VN +F + +      
Sbjct: 413  GDPKQAIYAFRGADIFTYMKARSEVHAH-YTLDTNWRSAPGMVNSVNKLFSQTD------ 465

Query: 483  GAFLFREKNGENPVPFLPVESQGRKESLQI--NGQAVPALNIWQLSSEQPLSGVVYRQQL 540
             AF+FRE      +PF+PV+S G+ ++L+    G+  PA+ +W +  E    G  Y+  +
Sbjct: 466  DAFMFRE------IPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGESCGVGD-YQSTM 518

Query: 541  AAACASEITALLNGGQQGRAGFVRGAEDLQGLLPADIAILVRDGKEAQAVRNELSVRGVR 600
            A  CA++I   L  GQ+G A  + G +D + +  +DI++LVR  +EA  VR+ L++  + 
Sbjct: 519  AQVCAAQIRDWLQAGQRGEALLMNG-DDARPVRASDISVLVRSRQEAAQVRDALTLLEIP 577

Query: 601  SVYLSDKDSVFAAQEAHDLLSWLKACAEPDVERPLRAALASITLNLSLTELERLNQDELA 660
            SVYLS++DSVF   EA ++L  L+A   P+ E  LR+ALA+  + L+  ++E LN DE A
Sbjct: 578  SVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLNALDIETLNNDEHA 637

Query: 661  WEKRVMQFREYRVIWRSQGILPMLRRLLHDFELPQALIARSDGERILTNLLHLSELLQQA 720
            W+  V +F  YR IWR +G++PMLR L+    + + L+A + GER LT++LH+SELLQ+A
Sbjct: 638  WDVVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGERRLTDILHISELLQEA 697

Query: 721  AAELDGEQALIRHLSEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPFI 780
              +L+ E AL+R LS+H+         Q +RLESD+ LV++VTIHKSKGLEYPLV+LPFI
Sbjct: 698  GTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVTIHKSKGLEYPLVWLPFI 757

Query: 781  CSAKPVDGSRLPMHYHDANG-QAQITLSPTPELIALADDERLAEDLRLLYVALTRAQHAC 839
             + +  + +     YHD +  +A + L+  PE + LA+ ERLAEDLRLLYVALTR+   C
Sbjct: 758  TNFRVQEQA----FYHDRHSFEAVLDLNAAPESVDLAEAERLAEDLRLLYVALTRSVWHC 813

Query: 840  WLGVTDL--KRGNNNSSV-LHLSALGYLLGGGEKLVESTALKRWLEDLQQNCSALSYGEM 896
             LGV  L  +RG+      +H SALG LL  GE   ++  L+  +E L  +  A    ++
Sbjct: 814  SLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEP-QDAAGLRTCIEALCDDDIAWQTAQI 872

Query: 897  ----PEATTERFLPPRNEATLLAPLIPKRKAAENWWIASYSALR-----IGDSLSAGSDE 947
                P    +      N  TL      +R   +NW + SYS L+     I   L    D 
Sbjct: 873  GDNQPWQVNDVSTAELNAKTL------QRLPGDNWRVTSYSGLQQRGHGIAQDLMPRLD- 925

Query: 948  APESPQAQKLFDDERLDPDAPREVLASGGDIHRFPRGPNPGTFLHGLLEWAGDEGFA--A 1005
              ++     + ++  L P             H+FPRG +PGTFLH L E   D  F    
Sbjct: 926  -VDAAGVASVVEEPTLTP-------------HQFPRGASPGTFLHSLFE---DLDFTQPV 968

Query: 1006 DPKSIENAIARRCNRRGWEG-WINTLSDWLQHLLQAPLRIGTEQPPVVFEQLT--EYRVE 1062
            DP    N +  +    G+E  W   L++W+  +LQAPL     +  V   QL+    +VE
Sbjct: 969  DP----NWVREKLELGGFESQWEPVLTEWITAVLQAPL----NETGVSLSQLSARNKQVE 1020

Query: 1063 MEFWF-ASHKVDVLKLDELVRQYTHAGASRVVAEPVLLNGMFKGFIDLTFEHAGRYYVAD 1121
            MEF+   S  +   +LD L+RQ+    A     E + + GM KGFIDL F H GRYY+ D
Sbjct: 1021 MEFYLPISEPLIASQLDTLIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLD 1080

Query: 1122 YKSNWLGADDSAYTEQAMEQSMLDHRYDLQYVLYLLALHRQLKARLADYDYDRHMGGALY 1181
            YKSNWLG D SAYT+QAM  +M  HRYDLQY LY LALHR L+ R+ADYDYDRH GG +Y
Sbjct: 1081 YKSNWLGEDSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIY 1140

Query: 1182 LFLRGT--RAPGQGVYFTRPPRELIERLDRLFQG 1213
            LFLRG     P QG+Y TRP   LI+ +D +F G
Sbjct: 1141 LFLRGVDKEHPQQGIYTTRPNAGLIDLMDEMFAG 1174