Pairwise Alignments

Query, 695 a.a., exodeoxyribonuclease V subunit alpha from Pseudomonas fluorescens FW300-N2E3

Subject, 608 a.a., exonuclease V (RecBCD complex), alpha chain from Escherichia coli BL21

 Score =  424 bits (1091), Expect = e-123
 Identities = 288/655 (43%), Positives = 377/655 (57%), Gaps = 67/655 (10%)

Query: 38  VERGWLRALDKAFVAFLHELAPDGDPLVLLAAALTSHQLGHGHVCLDLFETLKEPDFALS 97
           VE   LR LD   V F   +A D  P V LAAAL SH  G GHVCL L            
Sbjct: 11  VEHKQLRPLD---VQFALTVAGDEHPAVTLAAALLSHDAGEGHVCLPLSRLENN------ 61

Query: 98  LPPEGDLQTGTLLLPSQLLEALEGAHWCKVLASSSLVALAVDERDESQQRPLVLSGKRLY 157
                  +    LL + + E  E  +W + L +S     AV   DE    P++L G RLY
Sbjct: 62  -------EASHPLLATCVSEIGELQNWEECLLASQ----AVSRGDEPT--PMILCGDRLY 108

Query: 158 LRRYWTYERRIDSALRQRLIVHEPTPDDLSERLSGLFGQASSSAQIDWQKLACALATRGA 217
           L R W  ER +     +     E     L++ L  LF     S +I+WQK+A A+A    
Sbjct: 109 LNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLF---PVSDEINWQKVAAAVALTRR 165

Query: 218 FSIVTGGPGTGKTTTVVRLLALLQAPAVEAGKPLRIRLAAPTGKAAARLTESISQQVRTL 277
            S+++GGPGTGKTTTV +LLA L   A   G+  RIRLAAPTGKAAARLTES+ + +R L
Sbjct: 166 ISVISGGPGTGKTTTVAKLLAALIQMA--DGERCRIRLAAPTGKAAARLTESLGKALRQL 223

Query: 278 QVAESVRDKIPSDVTTVHRLLGSRPGTRHFRHHAGNRLPLDVLVVDEASMIDLEMMANLL 337
            +++  + +IP D +T+HRLLG++PG++  RHHAGN L LDVLVVDEASMIDL MM+ L+
Sbjct: 224 PLSDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLI 283

Query: 338 DALPTHARLVLLGDKDQLASVEAGAVLGDLCRDAEAGWYSPQTRDWLEAVSGENLGSSGL 397
           DALP HAR++ LGD+DQLASVEAGAVLGD+C  A AG+ + + R  L  ++G ++ +   
Sbjct: 284 DALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQ-LSRLTGTHVPAGTG 342

Query: 398 QEDIDATHPLAQQVVMLRHSRRFGEGSGIGQLARWVNQQQADEARKLLAARSHADLFSLP 457
            E       L   + +L+ S RFG  SGIGQLA  +N+     A K +  +   D+    
Sbjct: 343 TE----AASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGD-KTAVKTVFQQDFTDIEKRL 397

Query: 458 LKGEQDRALERLLLEGHGEGPQGYRHYLSLLRNQRPSINSLPDDPCWIEWARNVLQAFDA 517
           L+  +D      +LE   E   GY  YL LL+       + PD          ++QAF+ 
Sbjct: 398 LQSGEDYI---AMLE---EALAGYGRYLDLLQ-----ARAEPD---------LIIQAFNE 437

Query: 518 FQLLCAVRKGPWGVEGLNQRITGALLKARLI--DSDQQWYEGRPVLMTRNDYGLGLMNGD 575
           +QLLCA+R+GP+GV GLN+RI   + + R I      +WYEGRPV++ RND  LGL NGD
Sbjct: 438 YQLLCALREGPFGVAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGD 497

Query: 576 IGIALKLPERDGQEGGRQVLRVAFARNDGQGGVRFVLPSRLNDVETVYAMTVHKSQGSEF 635
           IGIAL     D  +G     RV FA  D  G ++ V PSRL + ET +AMTVHKSQGSEF
Sbjct: 498 IGIAL-----DRGQG----TRVWFAMPD--GNIKSVQPSRLPEHETTWAMTVHKSQGSEF 546

Query: 636 AHTALILPDALNPVLTKELIYTGITRAKNWFSLIEPRTGIFEEAVRRKVKRLSGL 690
            H ALILP    PV+T+EL+YT +TRA+   SL      I   A+  + +R SGL
Sbjct: 547 DHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADER-ILSAAIATRTERRSGL 600