Pairwise Alignments

Query, 372 a.a., LPS export ABC transporter permease LptF from Pseudomonas fluorescens FW300-N2E3

Subject, 366 a.a., lipopolysaccharide export ABC permease from Escherichia coli BL21

 Score =  213 bits (541), Expect = 9e-60
 Identities = 127/364 (34%), Positives = 199/364 (54%), Gaps = 7/364 (1%)

Query: 1   LIVFRYLSREVLLTLSAVSAVLLVIIMSGRFIKFLAQAASGALDPGSLFLIMGFRLPGFL 60
           +I+ RYL RE L +  A+  +LL+I    + ++ L  A  G +    +  ++G  +P   
Sbjct: 1   MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMA 60

Query: 61  QLILPLGLFLGILLAYGRLYLESEMTVLSATGMSQQRLLGMTLFPAALVAVIVAWLSLSL 120
           QLILPL LFLG+L+  G+LY ESE+TV+ A G+S+  L+   +  A   A++ A   +  
Sbjct: 61  QLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWA 120

Query: 121 APQGANQFQLLLNKQDAMTEFDTLVPGRFQALRDGSRVTYTEQLSDDRINLGGVFISEKR 180
            P  +     +L +  A      L  G+FQ   +GS V + E +  D  +   VF+++ R
Sbjct: 121 GPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESV--DGSDFKDVFLAQIR 178

Query: 181 LSADQKDRGISVLVAEKGRQEIKEDGNRYLILDNGYRYDGQPGLADYRAIKYDTYGVLLP 240
              + +    SV+VA+ G      DG++ + L+ G R++G   L D+R   +  Y  ++ 
Sbjct: 179 PKGNARP---SVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIG 235

Query: 241 KPDVSDEVTDRDAMPTRTLLDNPDIRARAELEWRVSLPLLVFIVTLMAVPLSRVNPRQGR 300
              V+ +  D D M  RTL +    RARAEL WR++L   VF++ LM VPLS VNPRQGR
Sbjct: 236 HQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGR 295

Query: 301 FLKLLPAILLYMAYLTILIAARGALEKGKIPPALGLWWVHAIFLAIGLGLLYWE--PLRL 358
            L +LPA+LLY+ +  I  + +    KGK+ P L +W V+ I+LA+ + L  W+  P+R 
Sbjct: 296 VLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRR 355

Query: 359 KMAS 362
             AS
Sbjct: 356 LRAS 359