Pairwise Alignments

Query, 298 a.a., recombinase XerD from Pseudomonas fluorescens FW300-N2E3

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score =  352 bits (904), Expect = e-102
 Identities = 182/290 (62%), Positives = 218/290 (75%), Gaps = 1/290 (0%)

Query: 9   IDQFLDALWLEKGLSDNTRDAYRSDLALFNGWLQEKGLELLNAGRELILDHLSWRLEQNY 68
           I+QFLDALWLEK L++NT +AYR DL++   WL  +GL L  A  + +   L+ RLE  Y
Sbjct: 8   IEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRGLTLATAQSDDLQALLAERLEGGY 67

Query: 69  KPRSTARFLSGVRGFYRYLLREKLIAVDPTLRVDMPQLGRPLPKSLSEADVEALLAAPDL 128
           K  S+AR LS VR  ++YL REK    DP+  +  P+L + LPK LSEA VE LL AP +
Sbjct: 68  KATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPKLPQRLPKDLSEAQVERLLQAPLI 127

Query: 129 SEAIGQRDRAMLEVLYACGLRVTELISLTLEQINLRQGVLRVMGKGSKERLVPMGEEAIV 188
            + +  RD+AMLEVLYA GLRV+EL+ LT+  I+LRQGV+RV+GKG+KERLVP+GEEA+ 
Sbjct: 128 DQPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVIGKGNKERLVPLGEEAVY 187

Query: 189 WVERYLRDGRSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQAKVAGI-GKSLSPHTLR 247
           W+E YL  GR  LL G   DVLFPS R +QMTRQTFWHRIKH A +AGI  + LSPH LR
Sbjct: 188 WLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLR 247

Query: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDLHAKHHPR 297
           HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVA  RL+ LH +HHPR
Sbjct: 248 HAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVATERLRQLHQQHHPR 297