Pairwise Alignments

Query, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas fluorescens FW300-N2E3

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 93.2 bits (230), Expect = 2e-24
 Identities = 56/161 (34%), Positives = 88/161 (54%), Gaps = 5/161 (3%)

Query: 2   SQSRFNHVFLAQRVSLLRTLERMVNNHSTAEDLLQETYLRVTRALSERAIDHLEPFVFQT 61
           +++RF  VF AQR  +   + R V   +TA DL+QE +LR  R   E  ++ L+ ++ + 
Sbjct: 17  ARARFVQVFQAQRARMEALVSRRVGCRATASDLVQELFLRFWRR-PEVKVEALDTYLLRC 75

Query: 62  ARNLALDHLRARRIQSRTMLEDVPLDVVQNIAAPLSSAEDAAHAEQLLERLNISLSQLTP 121
           A NLA+DHLR+   + R     VP+       AP    E A   +  L+R+  +L  L  
Sbjct: 76  AGNLAIDHLRSESSRERVAEAAVPVSEASLAQAP----EQAVEVDHDLQRIEATLRALPE 131

Query: 122 RQQQIFILSRLHGHSYLEIAEQLSVSLSTVQKDLKLIMAIC 162
           R +QIF+L+R+HG  Y EIA+ + +S S V+K +   +  C
Sbjct: 132 RTRQIFLLNRIHGCKYSEIAKAMQLSQSAVEKHMMRALEAC 172