Pairwise Alignments

Query, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N1B4

Subject, 340 a.a., DNA-binding transcriptional repressor from Pseudomonas putida KT2440

 Score =  506 bits (1304), Expect = e-148
 Identities = 264/340 (77%), Positives = 290/340 (85%), Gaps = 1/340 (0%)

Query: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRVKVEAAIKSLDYVPSAVARSLKAKTTA 60
           MATIKDVAALAGISYTTVSHV+NKTRPVSE+VR+KVEAAI  LDYVPSAVARSLKA++TA
Sbjct: 1   MATIKDVAALAGISYTTVSHVLNKTRPVSEQVRLKVEAAIIELDYVPSAVARSLKARSTA 60

Query: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120
           TIGLLVPNS+NPYFAELARGIED CERNGYCVILCNSDDNP KQRSYLRVLLEKRIDGL+
Sbjct: 61  TIGLLVPNSVNPYFAELARGIEDACERNGYCVILCNSDDNPQKQRSYLRVLLEKRIDGLV 120

Query: 121 VASAGGDSGLAEGLAGVRTPMVIVDRGLEGLDADLVRIDHEYGAYLATRHLLDLGHRDIA 180
           VAS G D  L + LA VRTPMVIVDR LEG+DADLVRIDHE GAYLATRHLL+LGHRD+A
Sbjct: 121 VASVGQDDDLLQSLASVRTPMVIVDRELEGVDADLVRIDHEQGAYLATRHLLELGHRDVA 180

Query: 181 TIGGPASTSVAQMRLAGYCRALKEAGVEVPRERMLESDFTSTGGYNAAAILLENNPPSAI 240
            IGGPA T V Q+RL+G+ RA+ EAG  VP  R+L  DFTS GG+ AAA +LE   PSAI
Sbjct: 181 YIGGPAETGVTQLRLSGFRRAMAEAGAPVPGSRVLHCDFTSPGGHAAAAQVLEGKRPSAI 240

Query: 241 FAGNDMIGIGVLRAAAERNIRVPTELSVIGFDDIQMSRYVYPALTTVGQSILQLGEMAAE 300
           FAGNDMIG GVLRAAAERNI VP ELSVIGFDDI++SRYVYP+LTTVGQSI +LGE AA 
Sbjct: 241 FAGNDMIGFGVLRAAAERNISVPGELSVIGFDDIELSRYVYPSLTTVGQSIRELGESAAS 300

Query: 301 VLLRRIATP-DLATDQRIVTPNIVLRESTAPLASVFAQFR 339
           +LL RIATP   A +QRIV P IVLREST P   +F  +R
Sbjct: 301 LLLTRIATPRQGAAEQRIVAPRIVLRESTGPRPDLFNDYR 340