Pairwise Alignments

Query, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N1B4

Subject, 330 a.a., DNA-binding transcriptional repressor of ribose metabolism (NCBI) from Escherichia coli BW25113

 Score =  256 bits (653), Expect = 7e-73
 Identities = 139/329 (42%), Positives = 208/329 (63%), Gaps = 2/329 (0%)

Query: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRVKVEAAIKSLDYVPSAVARSLKAKTTA 60
           MAT+KDVA LAG+S +TVSHV+NK R VSE +  KVEAAIK L+Y PSA+ARSLK   T 
Sbjct: 1   MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTH 60

Query: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120
           TIG+L+  S NP+++EL RG+E  C   GY ++LCN++ +  +    L  L++KR+DGL+
Sbjct: 61  TIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLL 120

Query: 121 VASAGGDSGLAEGLAGVRT-PMVIVDRGLEGLDADLVRIDHEYGAYLATRHLLDLGHRDI 179
           +          E +    T P V++D      D+DL++ +   G  LAT++L+D GH  I
Sbjct: 121 LLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGGDLATQYLIDKGHTRI 180

Query: 180 ATIGGPASTSVAQMRLAGYCRALKEAGVEVPRERMLESDFTSTGGYNAAAILLENN-PPS 238
           A I GP   + A++RL GY  A+K AG+ +P    +  DF   GG++A   LL +   P 
Sbjct: 181 ACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ 240

Query: 239 AIFAGNDMIGIGVLRAAAERNIRVPTELSVIGFDDIQMSRYVYPALTTVGQSILQLGEMA 298
           A+F GND + +GV +A  +  ++VP +++VIG+DDI+++ ++ P LTT+ Q   +LGE+A
Sbjct: 241 AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELA 300

Query: 299 AEVLLRRIATPDLATDQRIVTPNIVLRES 327
            +VL+ RI  P L   +  +TP ++ R S
Sbjct: 301 IDVLIHRITQPTLQQQRLQLTPILMERGS 329