Pairwise Alignments

Query, 339 a.a., Ribose operon repressor from Pseudomonas fluorescens FW300-N1B4

Subject, 341 a.a., DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) from Escherichia coli BW25113

 Score =  248 bits (632), Expect = 2e-70
 Identities = 146/332 (43%), Positives = 204/332 (61%), Gaps = 3/332 (0%)

Query: 1   MATIKDVAALAGISYTTVSHVVNKTRPVSEEVRVKVEAAIKSLDYVPSAVARSLKAKTTA 60
           MATIKDVA  A +S TTVSHV+NKTR V+EE R  V AAIK L Y PSAVARSLK   T 
Sbjct: 1   MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTK 60

Query: 61  TIGLLVPNSLNPYFAELARGIEDYCERNGYCVILCNSDDNPDKQRSYLRVLLEKRIDGLI 120
           +IGLL  +S   YFAE+   +E  C + GY +IL N+ +N +KQR+YL ++ +KR+DGL+
Sbjct: 61  SIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLL 120

Query: 121 VASAGGDSGLAEGLAGVR-TPMVIVDRGLEGLDADLVRIDHEY-GAYLATRHLLDLGHRD 178
           V  +     L   L   R  PMV++D G    D     ID+ + G Y+A R+L++ GHR+
Sbjct: 121 VMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHRE 180

Query: 179 IATIGGPASTSVAQMRLAGYCRALKEAGVEVPRERMLESDFTSTGGYNA-AAILLENNPP 237
           I  I GP   +    RLAG+ +A++EA ++VP   +++ DF    GY A   IL + + P
Sbjct: 181 IGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRP 240

Query: 238 SAIFAGNDMIGIGVLRAAAERNIRVPTELSVIGFDDIQMSRYVYPALTTVGQSILQLGEM 297
           +A+F G D++ +G L AA E  +RVP ++S+IG+D+++ +RY  PALTT+ Q    LGE 
Sbjct: 241 TAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGET 300

Query: 298 AAEVLLRRIATPDLATDQRIVTPNIVLRESTA 329
           A  +LL RI           V P ++ R S A
Sbjct: 301 AFNMLLDRIVNKREEPQSIEVHPRLIERRSVA 332