Pairwise Alignments

Query, 168 a.a., Transcriptional activator RfaH from Pseudomonas fluorescens FW300-N1B4

Subject, 177 a.a., antitermination protein NusG from Pseudomonas simiae WCS417

 Score = 54.3 bits (129), Expect = 1e-12
 Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%)

Query: 49  GQRRVISESLFPGYLFIQLSLQDSWGPLRSTRGVSRVVGFGG----QPLPIRD----ALI 100
           GQ+R      FPGY+ +Q+ + +  G     +   RV+GF G    +P PI D    A++
Sbjct: 51  GQKRKSERKFFPGYVLVQMDMNE--GTWHLVKDTPRVMGFIGGTADKPAPITDKEAEAIL 108

Query: 101 DELQERDSQAIVTTLLRHGDTVRITEGPFSDLEAVFLAMDGEE-RVLLMMNFLQREQHIS 159
             + +   +    TL   G+ VR+T+GPF+D       ++ E+ R+ + +    R   + 
Sbjct: 109 RRVADGSDKPKPKTLFEPGEVVRVTDGPFADFNGTVEEVNYEKSRIQVAVLIFGRSTPVE 168

Query: 160 LPLAGVNKI 168
           L  + V K+
Sbjct: 169 LEFSQVEKV 177