Pairwise Alignments

Query, 168 a.a., Transcriptional activator RfaH from Pseudomonas fluorescens FW300-N1B4

Subject, 181 a.a., Transcription antitermination protein NusG from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 63.9 bits (154), Expect = 1e-15
 Identities = 53/183 (28%), Positives = 85/183 (46%), Gaps = 22/183 (12%)

Query: 4   IAEHTAKAWYLLQCKPKQDERA----EEHLQRQGYA-----CFRSTYRRERVLRGQRRVI 54
           ++E   K WY++Q     + R      EH++              T     +  GQRR  
Sbjct: 1   MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKS 60

Query: 55  SESLFPGYLFIQLSLQD-SWGPLRSTRGVSRVVGFGG----QPLPIRD----ALIDELQE 105
               FPGY+ +Q+ + D SW  +RS   V RV+GF G    +P PI D    A+++ LQ+
Sbjct: 61  ERKFFPGYVLVQMVMNDASWHLVRS---VPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQ 117

Query: 106 RDSQAIVTTLLRHGDTVRITEGPFSDLEAVFLAMDGEE-RVLLMMNFLQREQHISLPLAG 164
              +    TL   G+ VR+ +GPF+D   V   +D E+ R+ + ++   R   + L  + 
Sbjct: 118 VGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQ 177

Query: 165 VNK 167
           V K
Sbjct: 178 VEK 180