Pairwise Alignments

Query, 428 a.a., Nitrate ABC transporter, nitrate-binding protein from Pseudomonas fluorescens FW300-N1B4

Subject, 408 a.a., Nitrate-binding regulatory protein (nasS) (from data) from Pseudomonas simiae WCS417

 Score =  517 bits (1332), Expect = e-151
 Identities = 248/382 (64%), Positives = 297/382 (77%), Gaps = 1/382 (0%)

Query: 48  WAAGSDAPEKAALKVGFIPLTDCASVVVAATQGFGEKYGLTITPSKEASWAGVRDKLLNG 107
           W  GSDAPEK++L +GF+ L+DCAS+VVAATQGF + YGLT+   ++ SWA +RDKL++G
Sbjct: 16  WVNGSDAPEKSSLDLGFMALSDCASMVVAATQGFAQPYGLTLNLKRQTSWANLRDKLVSG 75

Query: 108 ELDAAHVLYGLIYGVQLGIGG-PQKDMAMLMGLNQNGQAITLSNQLQQAGVTNGEQLAAK 166
           ELDAAH LYGLIY V LGIGG    DMA+LMGLNQNGQ+I LS  LQQ GV   E L   
Sbjct: 76  ELDAAHSLYGLIYAVHLGIGGVAPTDMAVLMGLNQNGQSINLSRGLQQQGVITPEALDRH 135

Query: 167 VKQGGTPLTFAQTFPTGTHAMWLNYWLASLGINPLTDVKTIVVPPPQMVANMRVGNMDGF 226
           V Q  T LTFAQTFPTGTHAMWL YWLAS GI+PL DV ++VVPPPQMVA+++ G +DGF
Sbjct: 136 VHQSRTKLTFAQTFPTGTHAMWLYYWLASQGIHPLQDVDSVVVPPPQMVAHLQAGRIDGF 195

Query: 227 CVGEPWGARAIADNIGFTALTTQKLWPDHPEKILGTTRAFVEQYPNTARALTMAVLDASR 286
           CVGEPW A A+  N GFT  TTQ +WPDHPEK+LG T+AFV+QYPNTAR L MA+L+ASR
Sbjct: 196 CVGEPWCASAVKQNQGFTLATTQAIWPDHPEKVLGCTQAFVDQYPNTARVLVMAILEASR 255

Query: 287 FIEASVENKKSTAQLIAGKAYVNAPVEVIEQRFLGHYDDGLGKQWTDEHAMSFCKDGSVN 346
           FIE S EN++STAQL++G+ Y++AP++ IE R LG YDDGLG  W D HA+ F  DG VN
Sbjct: 256 FIEESSENRRSTAQLLSGREYLDAPLDCIEPRLLGTYDDGLGNHWQDPHALRFFADGEVN 315

Query: 347 YPYLSDGMWFLTQFRRWGLLKEDVDYAGVAKSINQTKLYGEAASQLGLTVPGSPLRSSTL 406
            PYLSDGMWF+TQFRRWGLL+ED DY GVA+ + Q  LY +AA+ LG+      +RSS L
Sbjct: 316 LPYLSDGMWFMTQFRRWGLLREDPDYLGVARQVQQLPLYRQAAAALGIATKHPDMRSSQL 375

Query: 407 IDGKVWDGSNPAAYANSFTIKA 428
           IDGKVWDGS+PA YA SF + A
Sbjct: 376 IDGKVWDGSDPADYARSFRLHA 397