Pairwise Alignments

Query, 283 a.a., Protein rarD from Pseudomonas fluorescens FW300-N1B4

Subject, 296 a.a., putative chloramphenical resistance permease from Escherichia coli BL21

 Score =  113 bits (282), Expect = 6e-30
 Identities = 80/275 (29%), Positives = 137/275 (49%), Gaps = 10/275 (3%)

Query: 9   YTSLLSPLSGVEIFGWRMLLTAPCMTVFMVVSGEWKRVVEIVRRLAGKPKLIVGLIGSAV 68
           Y  L+  +   EI   R++ +   M V M +  +W  +  +++     P+ I  L  SAV
Sbjct: 26  YFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQT----PQKIFMLAVSAV 81

Query: 69  LLGLQLWLFMWAPLNGYSLDVSLGYFLLPLSMVLTGRIVYGERLSYLQKIAVFFASLGVL 128
           L+G    LF+WA  N + L+ SLGYF+ PL  ++ G I  GER   +Q +AV  A  GVL
Sbjct: 82  LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVL 141

Query: 129 NELYQVGGFSWATLLVVVGYPIYFILRKRLATDNLGGLWLDMALMLPV-AFWFVQGGEQG 187
            +L+  G      L +   +  Y ++RK++A +   G+ ++   +LPV A +     +  
Sbjct: 142 VQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSS 201

Query: 188 FGVFDQHPW-LSLLIPILGVISASALVVYIIASRLLPFSLFGLLSYVEPVLLLGVAL-LL 245
                Q+P  L+LL+   G+++   L+ +  A+  L  S  G   Y+ P L+  +A+   
Sbjct: 202 TSHMGQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFY 261

Query: 246 GESIKAGEWLTYIPIWLAVLVLVFEGFKHLVRQRR 280
           GE   A + +T+  IW+A+ + V +    +  QRR
Sbjct: 262 GEKPGADKMVTFAFIWVALAIFVMDA---IYTQRR 293