Pairwise Alignments

Query, 541 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N1B4

Subject, 539 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  360 bits (925), Expect = e-104
 Identities = 230/543 (42%), Positives = 329/543 (60%), Gaps = 8/543 (1%)

Query: 3   LRNLKIAPRAFLGFAFIALLVIVLGVFAVNRMSIIRQASVDMEMTQLPSIGFLGNVTENV 62
           ++ L  A R  +GFA   L ++ L  +A++ ++ ++Q S  +     P I  +  +   V
Sbjct: 1   MKQLTTAQRIVIGFAIAPLALVGLVFYALHDLATLKQQSEQIVQQDWPKIAPIMVIATGV 60

Query: 63  LRLRILSFRVLVNRDPAALQEAQTRIGVLVDKVRSAQASYAALPAGPEEAALYKTFATTL 122
                 +  +L+++D    Q+AQ  IG    ++  A A+   L    E  A Y T  T  
Sbjct: 61  RDNGRNTRDLLIDQDN---QQAQEAIGGTRQRITEAFATLEPLLDTAEGKAAYATLKTHR 117

Query: 123 DNYIQAQSQMLDLSRQNKLEEMRALINTRIKEGTDQMGEQLNKLVALNAADAKAASAKAG 182
           + Y+ A +Q+  L +Q   E+  A +  ++      + + L+ L+A+           A 
Sbjct: 118 EAYVAAFTQVQALIKQGAREQGLAQLKQQVMPAELAVFKSLDALMAMQGRLFAEREQAAQ 177

Query: 183 EHYSEAFIGIVTVAVMASLLTVLLAWLLTRSILTPL----NRAVLAAETIAGGNLSKVIE 238
             Y EA   ++ + ++   L V  A ++TRS++ PL    + A      IA G+L+ V+ 
Sbjct: 178 VLYDEARRNMIGLFLLCLALVVAAAIIVTRSVIRPLGGEPDEAARVLSHIAQGDLTIVVP 237

Query: 239 VDGNDEPARLLGALAAMQTNLRKTIEQIAGSATQLGAAAEELSTVTQEASRGLQQQNNEI 298
           V GN     ++  L  MQ NL + +  IA S   + +++EELS V+ + S  LQ Q  EI
Sbjct: 238 V-GNSAEGSVMRNLHQMQQNLNQMVRHIATSVDGVASSSEELSAVSSQTSSSLQSQGQEI 296

Query: 299 EQAATAVNEMTAAVEEVARNAVSTSEASNQSTQAAREGRDRVVETVDAIQTMTHDVQNTA 358
           EQAATAVNEMTAAV+EVARNAVSTSEAS  S Q A+ GR +V ETV +I T+   V  T+
Sbjct: 297 EQAATAVNEMTAAVDEVARNAVSTSEASRLSEQTAQRGRAQVQETVASINTLATGVVETS 356

Query: 359 LMIEGLATQGRDIGKVLDVIRAIAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRALAH 418
             I+ LA + +DI  VL+VIR+IA+QTNLLALNAAIEAARAG+AGRGFAVVADEVRALAH
Sbjct: 357 ERIQQLAGRVQDISSVLEVIRSIADQTNLLALNAAIEAARAGDAGRGFAVVADEVRALAH 416

Query: 419 RTAQSTQEIEKMVAGIQNGTGEAVSSMQQSNQRTQSTLEMARAAGIALEQITQSIQLINE 478
           RT  STQEIE+M+  I+  T  AV++M  S++R Q+TL +A+ +G AL++IT+SI  INE
Sbjct: 417 RTQASTQEIEQMIGNIRQDTEHAVAAMHSSSERVQATLSVAQRSGEALDEITRSISQINE 476

Query: 479 RNLVIASASEEQAQVSREVDRNLVNIRDLATQSAAGANQTSAATHELSRLAVDLNAMVAR 538
           RN++IASA+EEQA V+REVDRNLV IR+L+ Q   GA  T  A H+L+ +A  L+  VAR
Sbjct: 477 RNMMIASATEEQALVAREVDRNLVGIRNLSQQVLQGALHTETAGHDLAGMAGALHQTVAR 536

Query: 539 FVI 541
           F +
Sbjct: 537 FKV 539