Pairwise Alignments

Query, 271 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N1B4

Subject, 113 a.a., Transcriptional activator RamA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 48.1 bits (113), Expect = 8e-11
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 170 LDPELDLQRVAKECGYSRNQISYLLNQVLGQSFYRYVNQARLQHLLAALDAATPPLRIDE 229
           L+  L +  +A+  GYS+  +  L  Q  G+S  RYV + +L+  LAA D      ++ +
Sbjct: 19  LNQPLRIDDIARHAGYSKWHLQRLFMQYKGESLGRYVRERKLK--LAARDLLDTDQKVYD 76

Query: 230 LAFAAGFNSLSAFYSCFRRHTGLSPKAYAKQ 260
           +    GF+S   F   F R   L P AY K+
Sbjct: 77  ICLKYGFDSQQTFTRIFTRTFNLPPGAYRKE 107



 Score = 26.9 bits (58), Expect = 2e-04
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 219 DAATPPLRIDELAFAAGFNSLSAFYSCFRRHTGLSPKAYAKQISLRARAQD 269
           D    PLRID++A  AG++        F ++ G S   Y ++  L+  A+D
Sbjct: 17  DNLNQPLRIDDIARHAGYSKWH-LQRLFMQYKGESLGRYVRERKLKLAARD 66