Pairwise Alignments

Query, 807 a.a., UvrD/REP helicase family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score = 67.0 bits (162), Expect = 4e-15
 Identities = 49/177 (27%), Positives = 81/177 (45%), Gaps = 23/177 (12%)

Query: 508 LSDELLRPMSHLMIDEFQDVSPQIVSWIRASLAEIRSRGPAMHVGRGAQRSSLLCVGDDW 567
           L +   R   H+++DEFQD +    +W+R              + RG    SL+ VGDD 
Sbjct: 209 LLEHYQRRFRHVLVDEFQDTNAVQYAWLRL-------------LARGGD--SLMAVGDDD 253

Query: 568 QSIYGWRGSSPTYFMEFNKEFPSPSTTKVMLSDNYRSHQHIIDAAEHIVRAAPAIAGKKA 627
           QSIYGWRG+      ++  +F  P    + L  NYRS   I+ AA  ++       GK+ 
Sbjct: 254 QSIYGWRGAKIENIHQYTADF--PDAEMIRLEQNYRSTGGILKAANALIANNSGRLGKEL 311

Query: 628 ---KASGEPKALLPVNILDRDDQGMAQRLIEHYRKGDS---ILMLYRKSSDKSLIEE 678
                 GEP  L        + + + + +    ++G++   I +LYR ++   ++EE
Sbjct: 312 WTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLEE 368



 Score = 33.5 bits (75), Expect = 4e-05
 Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 16/70 (22%)

Query: 697 LKQLTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGLGKAGDSEAYDSAQKDEILR 756
           ++ +T HSAKGL+   VFL+G  + L   P+K  +               +  + +E  R
Sbjct: 557 IQLMTLHSAKGLEFPYVFLVGMEEGL--FPHKMSL--------------EEPGRLEEERR 600

Query: 757 LAYVGITRAV 766
           LAYVGITRA+
Sbjct: 601 LAYVGITRAM 610



 Score = 32.7 bits (73), Expect = 7e-05
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 128 VIAGAGAGKSTTLVLRILLLSHYLGFELSSMTVVTFTRESRKDFINKLIELFAIWGRGIS 187
           V+AGAG+GK+  LV RI  L         S+  VTFT ++  +   ++ +L  I   G+ 
Sbjct: 30  VLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNKAAAEMRQRIEQLLGINPAGM- 88

Query: 188 LKDARDLVRTFHSRILPMVRS 208
                  V TFH     ++R+
Sbjct: 89  ------WVGTFHGLAHRLLRA 103