Pairwise Alignments

Query, 807 a.a., UvrD/REP helicase family protein from Pseudomonas fluorescens FW300-N1B4

Subject, 824 a.a., DNA helicase II from Agrobacterium fabrum C58

 Score = 69.7 bits (169), Expect = 6e-16
 Identities = 39/108 (36%), Positives = 57/108 (52%), Gaps = 13/108 (12%)

Query: 518 HLMIDEFQDVSPQIVSWIRASLAEIRSRGPAMHVGRGAQRSSLLCVGDDWQSIYGWRGSS 577
           ++++DE+QD +     W+R  LA+     P           ++ CVGDD QSIYGWRG+ 
Sbjct: 265 YILVDEYQDTNTAQYMWLRL-LAQRAKDEP----------QNVCCVGDDDQSIYGWRGAE 313

Query: 578 PTYFMEFNKEFPSPSTTKVMLSDNYRSHQHIIDAAEHIVRAAPAIAGK 625
               + F+K+FP     K  L  NYRS +HI+ AA H++       GK
Sbjct: 314 VDNILRFDKDFPGAKVIK--LERNYRSTEHILGAAGHLIAHNEGRLGK 359



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 17/100 (17%)

Query: 678 EHIQSVVNVDSSLPYDARRLKQLTYHSAKGLQADAVFLLGDCQHLTSSPYKNQVYRMAGL 737
           EH+  V++ + +   DA  +  +T HSAKGL+ D VFL G  + L   P++        L
Sbjct: 582 EHVALVMDAEQNAELDAVSI--MTLHSAKGLEFDTVFLPGWEEGL--FPHQR------AL 631

Query: 738 GKAGDSEAYDSAQKDEILRLAYVGITRAVSHCY-WYVDGQ 776
            + G S        +E  RLAYVGITRA   C+ W+V  +
Sbjct: 632 DEGGRSGL------EEERRLAYVGITRAKKLCHIWFVSNR 665



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 128 VIAGAGAGKSTTLVLRILLLSHYLGFELSSMTVVTFTRESRKDFINKL 175
           V+AGAG GK+  L  RI  +        S +  VTFT ++ ++   ++
Sbjct: 73  VLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERI 120