Pairwise Alignments

Query, 690 a.a., VgrG protein from Pseudomonas fluorescens FW300-N1B4

Subject, 672 a.a., type IV secretion protein Rhs from Pseudomonas simiae WCS417

 Score =  648 bits (1671), Expect = 0.0
 Identities = 341/686 (49%), Positives = 432/686 (62%), Gaps = 22/686 (3%)

Query: 6   ATHISLTLEGVSVDLQVLSFVGREALNQPFCFDIELVSARPDLKLEELLHKSGCLTFGAT 65
           ++  +L L  V +DLQVL+F G E L+QPF   I++VS  P L LE LLH+   L FG  
Sbjct: 7   SSRFNLVLPHVDIDLQVLAFKGSEVLDQPFFIHIQVVSENPSLDLEALLHQPAYLAFGEA 66

Query: 66  GQGKIHGLVYRIEQGDSGKSLTRYSISLVPQLAYLRHNHDQQIFQQLSVPKIIAQVLEAR 125
             G +HG VY I + D G+  TRY ++L P+LAYL H  DQ+IFQQ SVP+IIA+VLE  
Sbjct: 67  DDG-LHGQVYAIGRDDPGRRTTRYHLTLAPRLAYLAHRRDQRIFQQRSVPQIIAEVLEQH 125

Query: 126 GILADAYSFQLG-AIYPERVYCVQYDESDLHFIQRLCEEEGIHFHFQHSTSGHKLVFGDD 184
           GILADAY+F+LG  +YP R +CVQY ESDLHFIQRLCEEEGIH+HF+HS   H LVFGDD
Sbjct: 126 GILADAYAFELGPVVYPPRTFCVQYAESDLHFIQRLCEEEGIHYHFRHSVDAHLLVFGDD 185

Query: 185 QTVFRKLAPVSYQQDSGMAAKKPVIKRFNLRLETRTTRVSRRDYDFEKPRLLPEGAAKSA 244
           QTVF +L    Y    G  A  PVI+RF++RL  R+ +  RRDYDFE P +    +A +A
Sbjct: 186 QTVFPRLPVQCYSAPGGPHADTPVIQRFDVRLGIRSQKTVRRDYDFEHPSVHLHDSAGAA 245

Query: 245 FAPDLEDYDYPGRFIDRARGKQLATRALERHRSDYQLAEGKGDEPTLVSGHFMALSEHPR 304
               LEDY YP  F    RGKQLA R+LE H+ D   A GK D+P L SGHF+ + +HP 
Sbjct: 246 STLPLEDYQYPAGFTAHTRGKQLARRSLELHQRDRYRALGKSDQPVLRSGHFLEIRDHPD 305

Query: 305 AEWNDLWLLLEIVHEGKQPQVLGENITSDVTHNKDDFHQGYRNRFLATPWDAHYRPALEH 364
              NDLWL+  + HEG QPQVL E   +       D  QGYRNRF ATPW A +RP+L H
Sbjct: 306 PSCNDLWLITSVRHEGYQPQVLEEATPAT------DVFQGYRNRFTATPWQAVHRPSLRH 359

Query: 365 PKPKVLGSQTAIVTGPAGEEIHCDEYGRVKVQFHWDRDGQGHDTSSCWLRVATGWAGNAY 424
            KP + GSQTA VTGPAGE++HCD YGRVKV+FHWDR  +  D SSCWLRVA+GWAG+ +
Sbjct: 360 TKPTINGSQTATVTGPAGEDVHCDVYGRVKVRFHWDRLDEADDKSSCWLRVASGWAGDGF 419

Query: 425 GGIAIPRIGMEVLVTFLEGDPDQPLITGCLYHKENVVPYDLPANKTRSTFKTLSSPGGKG 484
           G   IPR+GMEVLVTFL+GDPD+PLI GCL +  +   Y LP +KTRS  ++ SS GG+G
Sbjct: 420 GATMIPRVGMEVLVTFLDGDPDRPLINGCLPNALHRPTYPLPLHKTRSVLRSSSSLGGEG 479

Query: 485 YNEFRIEDKKGAEQIYLHAQRDWDENIEHDQKIRIGNERHDTVEANAFSEFKVEEHRLTH 544
            NE  +ED++G E +YL AQRD ++ I HD ++ +  ER + +   + +  K EEHR   
Sbjct: 480 SNELYLEDRRGEELVYLRAQRDLEQRIGHDSRLEVAGERQEVIHGISTTHLKSEEHRQVT 539

Query: 545 LDRTTEARADDHLTVGVTRHVKVGTAQFVEAGTEIHYHAGEKVVVEGGMELTAKAGGSFV 604
            DR    +A D+L V       V     +EAG ++H  +G  +V++ G EL+ KAGG  +
Sbjct: 540 GDRKVLLKASDYLDVHGDSRTHVAQTLVIEAGQQLHLKSGASLVIDAGAELSLKAGGEHL 599

Query: 605 KIDAGGVTISGAEVKVNSGGAPGAGTGIQILDPVIPWAAAKDKAGALLVPAAVQMAMAKA 664
            I AGG+  S     +  GG+            V   A A   AG   V + VQ  +   
Sbjct: 600 VIQAGGIFSSR---PIALGGSAS----------VTQLAGAFRVAGMPEV-SKVQGTIMNL 645

Query: 665 ARAAGDIRCPICEACREGKCDLGATA 690
           AR  G   CP+CE CREG CDL   A
Sbjct: 646 ARQLGADYCPVCEHCREGLCDLPGRA 671