Pairwise Alignments

Query, 690 a.a., VgrG protein from Pseudomonas fluorescens FW300-N1B4

Subject, 771 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  337 bits (865), Expect = 1e-96
 Identities = 221/652 (33%), Positives = 320/652 (49%), Gaps = 63/652 (9%)

Query: 19  DLQVLSFVGREALNQPFCFDIELVSARPDLKLEELLHKSGCLTFGATGQG--KIHGLVYR 76
           + +V+SF   E LNQPF  ++ELVS   D+    +L K    T  +  +    +HGLV  
Sbjct: 18  EFEVVSFKLDETLNQPFVLNLELVSYESDIDFGHVLDKPALFTLYSADRPLRHVHGLVSA 77

Query: 77  IEQGDSGKSLTRYSISLVPQLAYLRHNHDQQIFQQLSVPKIIAQVLEARGILADAYSFQL 136
             QG++G   TRY   + PQLA  R   + +IFQQ +VP+I+  + + +GI    +  + 
Sbjct: 78  FSQGETGFCRTRYHAVVEPQLARARLRSNWRIFQQKTVPQILELMFKRQGITR--FELKS 135

Query: 137 GAIYPERVYCVQYDESDLHFIQRLCEEEGIHFHFQHSTSGHKLVFGDDQTVFRKLA---- 192
            A +  R +CVQ  E+DL FI RL  EEG  + F+H    H L+  D    F  L+    
Sbjct: 136 SAQHQVREFCVQAGETDLDFIHRLAAEEGFVYRFEHCARQHTLIVTDRLLSFGLLSRGAL 195

Query: 193 ------------------PVSYQQDSGMAAKKPVIKRFNLRLETRTTRVSRRDYDFEKPR 234
                              V Y   SG    +  ++R     + RT R  +RDY F  P 
Sbjct: 196 KAEDDEALWLDEDDVGPDKVLYHASSGGDQARACLRRLRYCEQVRTARQVQRDYTFTNPA 255

Query: 235 LLPEGAAKSAFAP----DLEDYDYPGRFIDRARGKQLATRALERHRSDYQLAEGKGDEPT 290
              E  A+++       D E +DYPGR+   A GK      L   R D  LAE +GD+  
Sbjct: 256 YRQEHKAQTSGVTHQSLDYERFDYPGRYKRDAVGKPFTETRLTALRHDACLAEVQGDDVR 315

Query: 291 LVSGHFMALSEHPRAEWNDLWLLLEIVHEGKQPQVLGENITSDVTHNKDDFHQGYRNRFL 350
           L +G    L  HPR + N  W ++ + HEG Q   L E         +      Y N  L
Sbjct: 316 LQTGLSFTLVGHPREDLNVHWRVISLCHEGTQLTSLQEEAAGAEQGTR------YVNDAL 369

Query: 351 ATPWDAHYRPALEHPKPKVLGSQTAIVTGPAGEEIHCDEYGRVKVQFHWDRDGQGHDTSS 410
                A +RPA    KP++ G   A V GP GEEI+CDE+GRVKV F WDR+ + ++ SS
Sbjct: 370 LVQGMAEWRPA-PMAKPRIDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESKNNEFSS 428

Query: 411 CWLRVATGWAGNAYGGIAIPRIGMEVLVTFLEGDPDQPLITGCLYHKENVVPYDLPANKT 470
           CW+ V+ GWAG ++G +AIPRIG +V+V ++ GDPDQP+ITG  Y  + + PYDLP +KT
Sbjct: 429 CWVWVSQGWAGGSWGSMAIPRIGQDVIVQYVNGDPDQPMITGRTYCGDQLPPYDLPDHKT 488

Query: 471 RSTFKTLSSPGGKGYNEFRIEDKKGAEQIYLHAQRDWDENIEHDQKIRIGNERHDTVE-- 528
           R T K+  +  G G+NE R ED+ G +++++HA+RD +  ++H++   IGN+R + VE  
Sbjct: 489 RMTIKS-QTHKGDGFNELRFEDELGRQEVFIHAERDQNNVVKHNETTLIGNDRSERVEHD 547

Query: 529 ------ANAFSEFKVEEHRLTHLDRTTEARADDHLTVGVTRHVKVG---TAQF-----VE 574
                  N   +    +     L +         L VG    V VG   T Q      V+
Sbjct: 548 EVVDIGGNRSVKVGASKRETVALGKVESIGLGKSLAVGGALSVMVGLEATEQVALDKRVQ 607

Query: 575 AGTEIHYHAGEKVV---------VEGGMELTAKAGGSFVKIDAGGVTISGAE 617
            G ++   A E V          ++    LT   GG+F+K+  G + I   E
Sbjct: 608 VGGQLRVDADEDVSITSHHGHVHIDSRTSLTLSCGGAFIKLSDGRIEIGCPE 659