Pairwise Alignments

Query, 690 a.a., VgrG protein from Pseudomonas fluorescens FW300-N1B4

Subject, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

 Score =  352 bits (904), Expect = e-101
 Identities = 214/580 (36%), Positives = 304/580 (52%), Gaps = 53/580 (9%)

Query: 21  QVLSFVGREALNQPFCFDIELVSARPDLKLEELLHKSGCLTF--GATGQGKIHGLVYRIE 78
           +V+SF  RE ++ PF  +++L+S   D+    LL K    T   G      +HGLV    
Sbjct: 21  EVVSFELREGISAPFELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSFS 80

Query: 79  QGDSGKSLTRYSISLVPQLAYLRHNHDQQIFQQLSVPKIIAQVLEARGILADAYSFQLGA 138
           QG+SG   T Y   + PQLA  R   + +IFQ  +VP+I+  +L+ +GI  D Y  +   
Sbjct: 81  QGESGFYRTYYHALVEPQLARARLRSNWRIFQHKTVPQILELMLKRQGI--DQYELRASM 138

Query: 139 IYPERVYCVQYDESDLHFIQRLCEEEGIHFHFQHSTSGHKLV------------------ 180
            +  R +CVQ  E+DL FI RL  EEG  + F HS   HKL+                  
Sbjct: 139 DHQVREFCVQAGETDLAFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIKA 198

Query: 181 ------FGDDQTVFRKLAP--VSYQQDSGMAAKKPVIKRFNLRLETRTTRVSRRDYDFEK 232
                 FGDD      + P  V YQ +SG     P ++R     + RT R  +RD+ F  
Sbjct: 199 DHEDEGFGDDD---EPVGPDSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTH 255

Query: 233 PRLLPEGAAKSAF----APDLEDYDYPGRFIDRARGKQLATRALERHRSDYQLAEGKGDE 288
           P    E  A   F    + D E +DYPGR+   A GK      +   R D ++AE +GD+
Sbjct: 256 PAYRQEHRAAGPFLEHQSKDYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDD 315

Query: 289 PTLVSGHFMALSEHPRAEWNDLWLLLEIVHEGKQPQVLGENITSDVTHNKDDFHQGYRNR 348
             L  G    L++HPR + N  W +  + HEG QP  L E           D    Y  +
Sbjct: 316 VRLQPGLSFTLTDHPREDLNVHWRVSTVHHEGSQPTSLQEEAAGA------DQGTRYEQK 369

Query: 349 FLATPWDAHYRPALEHPKPKVLGSQTAIVTGPAGEEIHCDEYGRVKVQFHWDRDGQGHDT 408
            +  P    +RPA   PKP+V G   A V GP GEEI+CDE+GRVKV F WDR+ Q ++ 
Sbjct: 370 AVLVPGRTEWRPA-PLPKPRVDGPHMATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEF 428

Query: 409 SSCWLRVATGWAGNAYGGIAIPRIGMEVLVTFLEGDPDQPLITGCLYHKENVVPYDLPAN 468
           SSCWLRV+ GWAG ++G +AIPRIG +V++ ++ GDPDQP+ITG  Y    + PYDLP +
Sbjct: 429 SSCWLRVSQGWAGGSWGSMAIPRIGQDVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRH 488

Query: 469 KTRSTFKTLSSPGGKGYNEFRIEDKKGAEQIYLHAQRDWDENIEHDQKIRIGNERHDTVE 528
           KTR T K+  +  G G+NE R ED+ G E++++HAQRD +  ++HD+  ++GN+R + V+
Sbjct: 489 KTRMTIKS-QTHKGDGFNELRFEDELGQEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVD 547

Query: 529 ANAFSEFKVEEHRLTHLDRTTEARADDHLTVGVTRHVKVG 568
                    +E  L   DRT     D+ +T+G    + +G
Sbjct: 548 N--------DESILIGHDRTETVGNDERITIGQDAALDIG 579