Pairwise Alignments

Query, 323 a.a., Site-specific recombinase, phage integrase family from Pseudomonas fluorescens FW300-N1B4

Subject, 298 a.a., site-specific tyrosine recombinase XerD (NCBI) from Escherichia coli BW25113

 Score = 77.4 bits (189), Expect = 4e-19
 Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 10/238 (4%)

Query: 70  QPEDVVALVATLREDGYAPNTSSLYVNAVRGVMNEAWRMSLISQEHLLKMRSVKGIAGTR 129
           Q +D+ AL+A   E GY   +S+  ++AVR +    +R      +    + S K     R
Sbjct: 51  QSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLASPK--LPQR 108

Query: 130 LSQGRNLKRTLIRDLMEVCAADPRPQGLRDAAIIGILYGSGMRKSESVNLDLAQVDFTER 189
           L   ++L    +  L++    D +P  LRD A++ +LY +G+R SE V L ++ +   + 
Sbjct: 109 LP--KDLSEAQVERLLQAPLID-QPLELRDKAMLEVLYATGLRVSELVGLTMSDISLRQG 165

Query: 190 SLCVTAKGNKQLIKYAPAWAFAKLDAWLELRRSQLKEGETDDPFLFNRIRRGSHITRERI 249
            + V  KGNK+ +      A   L+ +LE  R  L  G + D    +  +R   +TR+  
Sbjct: 166 VVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPS--QRAQQMTRQTF 223

Query: 250 TKHAIYYIARQRGAQVGVKIMPHDFRRSFITRVIEE-HDLSIAQKLAHHSNIQTTANY 306
             H I + A   G     K+ PH  R +F T ++    DL + Q L  HS++ TT  Y
Sbjct: 224 W-HRIKHYAVLAGID-SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279