Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N1B4

Subject, 385 a.a., cytoplasmic membrane lipoprotein (NCBI) from Escherichia coli BW25113

 Score =  303 bits (777), Expect = 4e-87
 Identities = 167/377 (44%), Positives = 234/377 (62%), Gaps = 3/377 (0%)

Query: 5   LLARLSLIALALTLSACDQSSTAEEQAPLATVRVETVEARPLSISSELSGRIVAPRIAEV 64
           LL    LI+ AL ++ C+     +       V V  V+  PL + +EL GR  A RIAEV
Sbjct: 9   LLPSFILISAAL-IAGCNDKGEEKAHVGEPQVTVHIVKTAPLEVKTELPGRTNAYRIAEV 67

Query: 65  RARVAGVVLQQAFREGSDVKKGDVLFRIDPAPFKADLDSAEAALRKAEANAFQARLQEQR 124
           R +V+G+VL + F EGSDV+ G  L++IDPA ++A+ DSA+  L K+EA A  A L  +R
Sbjct: 68  RPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQANYDSAKGELAKSEAAAAIAHLTVKR 127

Query: 125 YAQLIEGNAISGQDYDNARANARQTAADVAANKAAVERAKLNLGYATVTAPISGRIGRAL 184
           Y  L+    IS Q+YD A A+ARQ  A V A KA VE A++NL Y  VTAPISGRIG++ 
Sbjct: 128 YVPLVGTKYISQQEYDQAIADARQADAAVIAAKATVESARINLAYTKVTAPISGRIGKST 187

Query: 185 VTEGALVGQNETTPLALIQQLNPIHADLTQSTRELNDLRRAFRSGQLKEVGQGQAKATLI 244
           VTEGALV   +TT LA +QQL+PI+ D+TQS+ +   L+++   G L +     +   L+
Sbjct: 188 VTEGALVTNGQTTELATVQQLDPIYVDVTQSSNDFMRLKQSVEQGNLHK-ENATSNVELV 246

Query: 245 QDDGSLYPLPGKLLFTDITVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAFNQQGIS 304
            ++G  YPL G L F+D+TVD  TG I LR+ FPNP   LLPG FVR R+++      I 
Sbjct: 247 MENGQTYPLKGTLQFSDVTVDESTGSITLRAVFPNPQHTLLPGMFVRARIDEGVQPDAIL 306

Query: 305 VPQRAIQRDSAGIAQVLVLDAEQRVGQQPVELGAVQNDRWIVTNGLKPGDRIVTEGLQHA 364
           +PQ+ + R   G A VL+++ + +V  +PV       D+W+++ GLK GD+++  GLQ A
Sbjct: 307 IPQQGVSRTPRGDATVLIVNDKSQVEARPVVASQAIGDKWLISEGLKSGDQVIVSGLQKA 366

Query: 365 RPGEKVQ-IDDTPLPLA 380
           RPGE+V+   DTP   A
Sbjct: 367 RPGEQVKATTDTPADTA 383