Pairwise Alignments

Query, 385 a.a., RND efflux system, membrane fusion protein CmeA from Pseudomonas fluorescens FW300-N1B4

Subject, 397 a.a., multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score =  317 bits (811), Expect = 5e-91
 Identities = 172/369 (46%), Positives = 240/369 (65%), Gaps = 1/369 (0%)

Query: 6   LARLSLIALALTLSACDQSSTAEEQAPLATVRVETVEARPLSISSELSGRIVAPRIAEVR 65
           LA + +++ +L L+ CD     +    +  V V TV+  PL I++EL GR  A RIAEVR
Sbjct: 10  LAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVTVKTEPLQITTELPGRTSAYRIAEVR 69

Query: 66  ARVAGVVLQQAFREGSDVKKGDVLFRIDPAPFKADLDSAEAALRKAEANAFQARLQEQRY 125
            +V+G++L++ F+EGSD++ G  L++IDPA ++A  DSA+  L KA+A A  A+L   RY
Sbjct: 70  PQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRY 129

Query: 126 AQLIEGNAISGQDYDNARANARQTAADVAANKAAVERAKLNLGYATVTAPISGRIGRALV 185
            +L+    IS Q+YD A A+A+Q  A V A KAAVE A++NL Y  VT+PISGRIG++ V
Sbjct: 130 QKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNV 189

Query: 186 TEGALVGQNETTPLALIQQLNPIHADLTQSTRELNDLRRAFRSGQLKEVGQGQAKATLIQ 245
           TEGALV   + T LA +QQL+PI+ D+TQS+ +   L++   +G LK+   G+AK +LI 
Sbjct: 190 TEGALVQNGQATALATVQQLDPIYVDVTQSSNDFLRLKQELANGTLKQ-ENGKAKVSLIT 248

Query: 246 DDGSLYPLPGKLLFTDITVDPGTGQIILRSEFPNPDLDLLPGSFVRVRLEQAFNQQGISV 305
            DG  +P  G L F+D+TVD  TG I LR+ FPNPD  LLPG FVR RLE+  N   I V
Sbjct: 249 SDGIKFPQDGTLEFSDVTVDQTTGSITLRAIFPNPDHTLLPGMFVRARLEEGLNPNAILV 308

Query: 306 PQRAIQRDSAGIAQVLVLDAEQRVGQQPVELGAVQNDRWIVTNGLKPGDRIVTEGLQHAR 365
           PQ+ + R   G A VLV+ A+ +V  +P+       D+W+VT GLK GDR+V  GLQ  R
Sbjct: 309 PQQGVTRTPRGDATVLVVGADDKVETRPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVR 368

Query: 366 PGEKVQIDD 374
           PG +V+  +
Sbjct: 369 PGVQVKAQE 377