Pairwise Alignments

Query, 286 a.a., Ku domain protein from Pseudomonas fluorescens FW300-N1B4

Subject, 277 a.a., DNA repair protein from Pseudomonas simiae WCS417

 Score =  446 bits (1147), Expect = e-130
 Identities = 224/276 (81%), Positives = 249/276 (90%)

Query: 1   MARAIWKGAISFGLVHIPVALVSATSSHGIDFNWLDSRSMDPVGYKRINKATGKEVTQEH 60
           M RAIWKGAISFGLVHIPV+LVSATSS G+DF+WLD RSMDPVGYKRINK TGKEVT+++
Sbjct: 1   MPRAIWKGAISFGLVHIPVSLVSATSSQGVDFDWLDKRSMDPVGYKRINKTTGKEVTKDN 60

Query: 61  IVKGIEYEKGRYVVLSEEEIRSAHPLSTQTIDIFAFVGSEQIPLQNIDTPYYLAPDKRGG 120
           IVKG+ +EKGRYVVLSEEEIRSAHP STQTI+I AFV S+QIPLQNIDTPY+LAPDKRGG
Sbjct: 61  IVKGVAFEKGRYVVLSEEEIRSAHPKSTQTIEIIAFVASDQIPLQNIDTPYFLAPDKRGG 120

Query: 121 KVYALLRETLSKTDKVALARVVLHSRQHLAALMPLESAMVLVMLRWPAEVRSLDQLELGS 180
           KVYALLRETL KT KVALA VVLH++QHLAALMPL+SA+VLVMLRWPAEVRSLD+LELGS
Sbjct: 121 KVYALLRETLRKTRKVALANVVLHTKQHLAALMPLDSALVLVMLRWPAEVRSLDELELGS 180

Query: 181 EVTKPDLAKGELEMAKRLVEDMSADWTPEEYRDSFEDKIMALVEKKANEGKIEDVETVTG 240
           +VTKP LAKGEL+MAKRLV+DMSADW P++YRDSF++KIMALV KKA  GKIEDVET   
Sbjct: 181 DVTKPSLAKGELDMAKRLVDDMSADWQPDDYRDSFQEKIMALVAKKAKAGKIEDVETSKD 240

Query: 241 EEVRKTADVIDLTELLKRSLGGKGSGKPAAKAKTSA 276
            E RK+ADVIDLTELLKRSL GK + KPAAK  T A
Sbjct: 241 SEERKSADVIDLTELLKRSLAGKPTKKPAAKKSTKA 276