Pairwise Alignments

Query, 286 a.a., Ku domain protein from Pseudomonas fluorescens FW300-N1B4

Subject, 298 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  125 bits (313), Expect = 1e-33
 Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 15/286 (5%)

Query: 3   RAIWKGAISFGLVHIPVAL-VSATSSHGIDFNWLDSRSMDPVGYKRINKATGKEVTQEHI 61
           RA WKG I +G V  PVAL  +A+SS  I FN L+ ++ + V  + ++  TG  V ++  
Sbjct: 5   RANWKGFIKYGEVACPVALYTAASSSERIAFNTLNRKTGNRVKREFVDSETGDPVERDEQ 64

Query: 62  VKGIEYEKGRYVVLSEEEIRSAHPLSTQTIDIFAFVGSEQIPLQNIDTPYYLAPDKRGGK 121
           VKG E E G+Y++L  EE+ +A P S +T+ I AF+   +I     D PYYLAPDK G  
Sbjct: 65  VKGYEVENGQYIILEPEEVAAAVPDSDKTLKIDAFIPCHEIDDVYFDKPYYLAPDKMGTD 124

Query: 122 VYALLRETLSKTDKVALARVVLHSRQHLAALMPLESAMVLVMLRWPAEVRSLDQLELGSE 181
            + LLR+ + K    A+AR VL  R     + P    ++   L +  EVRS    E   E
Sbjct: 125 AFLLLRDGMKKAKVAAIARTVLFRRVRTVLIRPHGKGLIATTLNFDYEVRS--SQEAFEE 182

Query: 182 VTKPDL-AKGE-LEMAKRLVEDMSADWTPEEYRDSFEDKIMALVEKKANEGKIEDVETVT 239
           +  PDL  +GE LE+A+ ++      +    + D +E  +  LV+ K  EG+      + 
Sbjct: 183 L--PDLKIEGEMLELAEHIIGTKKGSFDASAFDDRYEAAVAELVKAKI-EGR-----ALP 234

Query: 240 GEEVRKTADVIDLTELLKRSLGGKGSGKPAAKAKTSADKKATKHSR 285
            ++    +   DL + L+ S G     K A+K   +   K T   +
Sbjct: 235 KKKAPPASKPSDLLQALRESAG--VVAKAASKRTAANVNKGTSRQK 278