Pairwise Alignments

Query, 357 a.a., Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 364 a.a., predicted oligopeptide transporter subunit (NCBI) from Escherichia coli BW25113

 Score =  459 bits (1180), Expect = e-134
 Identities = 230/364 (63%), Positives = 279/364 (76%), Gaps = 9/364 (2%)

Query: 1   MLAYIFRRLLLIIPTLLGILLINFVIIQAAPGGPVEQMIAKLE-GFEGATSRIAGGGAEV 59
           M AY+ RRLLL+IPTL  I+ INF I+Q APGGPV+Q IA +E G  G      G G   
Sbjct: 1   MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEFGNAGVLPGAGGEGVRA 60

Query: 60  S--------VAGSAYRGAQGLDPALVKEIEHMYGFDKSAPERLWIMIKNYATLDFGDSFF 111
           S        ++ S YRG +GLDP ++ EI H YGFDK   ER + M+ +Y   DFGDS F
Sbjct: 61  SHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHERYFKMLWDYIRFDFGDSLF 120

Query: 112 RDAKVIDLIKEKLPVSISLGLWSTLIMYLVSIPLGIAKATRHGSHFDVWTSSAIIVGYAI 171
           R A V+ LIK+ LPVSI+LGLWSTLI+YLVSIPLGI KA  +GS FDVW+S+ II+GYAI
Sbjct: 121 RSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAVYNGSRFDVWSSAFIIIGYAI 180

Query: 172 PAFLFAILLIVVFAGGSYFDWFPLRGLTSNNFDELSTGGKILDYFWHLALPVTALVIGNF 231
           PAFLFAILLIV FAGGSYFD FPLRGL S NFD L    KI DY WH+ LPV A VIG F
Sbjct: 181 PAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWYQKITDYLWHITLPVLATVIGGF 240

Query: 232 ATMTLLTKNSFLDEINKQYVVTAKAKGLTRHRVLYGHVFRNAMLLVIAGFPSAFIGIFFT 291
           A +T+LTKNSFLDE+ KQYVVTA+AKG++   +L+ HVFRNAMLLVIAGFP+ FI +FFT
Sbjct: 241 AALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWKHVFRNAMLLVIAGFPATFISMFFT 300

Query: 292 GSLLVEVIFSLDGLGLMSFEAAINRDYPVVFGTLFIFTLLGLVVKLIGDLTYTFVDPRID 351
           GSLL+EV+FSL+GLGL+ +EA ++RDYPV+FGTL+IFTL+GL++ ++ D++YT VDPRID
Sbjct: 301 GSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTLYIFTLIGLLLNIVSDISYTLVDPRID 360

Query: 352 FESR 355
           FE R
Sbjct: 361 FEGR 364