Pairwise Alignments

Query, 297 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N1B4

Subject, 173 a.a., KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) from Escherichia coli BW25113

 Score = 47.8 bits (112), Expect = 2e-10
 Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 9/137 (6%)

Query: 24  RILGSRTEAEDVVQELFIKWLEADRAS-IATPAAWLTTACTRHCIDLLRSAHTSRVDYVG 82
           R L S  +A+D+ Q+ F++ + ++  S I  P ++L T   R  +DL R     +  Y+ 
Sbjct: 30  RKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKRVMVDLFRRNALEKA-YL- 87

Query: 83  TWLPEPIHTTHQHSPEHMHELASSLSTAFLL--LLERLTPKERAAYLLYEIFDMDYAQVA 140
               E +    +       E  S L T  LL  +L+ L  K R A+LL ++  + Y+++A
Sbjct: 88  ----EMLALMPEGGAPSPEERESQLETLQLLDSMLDGLNGKTREAFLLSQLDGLTYSEIA 143

Query: 141 EAIGVQEAACRKLVSRA 157
             +GV  ++ +K V++A
Sbjct: 144 HKLGVSISSVKKYVAKA 160