Pairwise Alignments

Query, 417 a.a., Probable porin from Pseudomonas fluorescens FW300-N1B4

Subject, 433 a.a., outer-membrane porin D from Pseudomonas putida KT2440

 Score =  337 bits (863), Expect = 5e-97
 Identities = 179/409 (43%), Positives = 251/409 (61%), Gaps = 17/409 (4%)

Query: 22  AGASDFIDDSKLKLQLRNVYFNENFRDEHGLSARSARTAKSERAEWAQGFLLDFQSGFTP 81
           A A+ F++D+  K++ RNVYFN +FRD +  S++ A    S+R EWAQGF+L+ QSG+T 
Sbjct: 29  AQAAGFLEDASAKIEARNVYFNRDFRDGYSSSSQGA----SKREEWAQGFILNVQSGYTQ 84

Query: 82  GTIGFGVDALGLLGVKLDSGRGRSGTGLLPV--HDDGRAADEFASAGAAAKVKLAKTTLK 139
           G +G GVDALG+ G KLDS    S +GLLP   HD  R+AD++A  G AAKVK++ T LK
Sbjct: 85  GPVGVGVDALGMFGFKLDSSPADSNSGLLPSSGHDPRRSADQYAKMGLAAKVKVSNTVLK 144

Query: 140 YGTLLPKTPVLIYNDARLLPQTYEGGQVSSTDIENLTLTGGHLDRFKLRDSTDSVSI--- 196
           YG+++P  P+L YND RLLP  + G  ++S ++ +L  T   LD++  RDSTD   I   
Sbjct: 145 YGSMMPDVPLLKYNDGRLLPTLFHGAMLTSEELHDLKFTLARLDKYTARDSTDRQDIRVH 204

Query: 197 -VPDGYSGDKGGD-FTYAGGDYKLGKNTRLSYFYGELENFYRQNFAGLQHDLPLGPGVLT 254
                Y+ D   D F  AG DY+  +     Y   +LEN YRQ+F GL    PL  G L+
Sbjct: 205 CKNKRYACDTEADHFDLAGVDYRFNERFSAQYQVAKLENIYRQHFLGLVASQPLPVGSLS 264

Query: 255 GDLRYFSSNDAGRAYASKIDNDMLSGQLSYAVAGHTFGGGYQQLSGDAGLPYISGATVYS 314
            D+R   S+D G A A +ID+   SG L Y++ GH    G+Q++ G++ +PY+ G+  Y 
Sbjct: 265 ADMRLIKSDDIGNARAGEIDHRAFSGMLGYSLGGHKLSAGWQRMYGNSAMPYLDGSNPYL 324

Query: 315 FSNVGIGKFIEEDEKTWMLSYGYDFAPVGVPGLTFMTRYLKGNDGK---SDTNIKESERD 371
            +   +  F    E++W + Y YDF  +GVPGLTF TRY+ G++ K   S    KE ERD
Sbjct: 325 VNYAQVNDFAAAQERSWQVRYDYDFKALGVPGLTFFTRYINGDNIKVPGSSVEGKEWERD 384

Query: 372 TELAYVVQSGTFKGVGVKLRNYVYRSDF---ARGRDSNRIYVTYDIALW 417
           TE  Y VQSGTFK V V+LRN  YRS++   AR  D  R+ V+Y+ +++
Sbjct: 385 TEFKYQVQSGTFKDVSVRLRNSTYRSNYERWARDMDETRVIVSYNFSIF 433