Pairwise Alignments

Query, 540 a.a., Permeases of the major facilitator superfamily from Pseudomonas fluorescens FW300-N1B4

Subject, 500 a.a., glycine/betaine ABC transporter from Pseudomonas simiae WCS417

 Score =  209 bits (531), Expect = 3e-58
 Identities = 124/328 (37%), Positives = 185/328 (56%), Gaps = 19/328 (5%)

Query: 19  ETQKVIFASSLGTVFEWYDFFLYGALAAVISKQFFAGVNDTTAFIFALMAFAAGFIVRPF 78
           + +K I A++LG   EW+DF +YG +A V+ K FF   + +   I AL  F+  F++RP 
Sbjct: 23  KVRKAITAAALGNAMEWFDFGVYGFVAYVLGKVFFPDASPSVQMIAALGTFSVPFLIRPL 82

Query: 79  GALVFGRLGDMIGRKYTFLATIVLMGVATFCVGLLPTYASIGIAAPIILVVLRMLQGLAL 138
           G L FG LGD  GR+    ATIV+M ++TF +GL+P+YASIGI API+L++ +M QG ++
Sbjct: 83  GGLFFGALGDKYGRQKVLAATIVIMSLSTFAIGLIPSYASIGIWAPILLLLCKMAQGFSV 142

Query: 139 GGEYGGAATYVAEHAPMGKRGFHTSWIQSTATLGLLLSLLVVLGCRYFTGD-QFEVWGWR 197
           GGEY GA+ +VAE+AP  KRGF  SW+   +  G +L   VV+      G+  FE WGWR
Sbjct: 143 GGEYTGASIFVAEYAPDRKRGFLGSWLDFGSIAGFVLGAGVVVLISSILGEADFESWGWR 202

Query: 198 IPFLFSIVLLGISTWIRLSLHESPAFVKMKEEGKLCKSPLRDSFGKWDNLKV-------- 249
           +PF  ++ L  I  ++R +L E+PAF     +  + K    D  G     KV        
Sbjct: 203 LPFFLALPLGIIGLYLRHALEETPAF-----QQHMDKMEQGDREGLTHGPKVSFKEVATK 257

Query: 250 ---VLIALFSINAGQAVTFYAAQFYVLFFLTQFLKMDPALANSLLIVSVIIGAPFF-IFF 305
               L+    I A   VT+Y    Y+  +L+  L      +  L+I+++++G  F   F 
Sbjct: 258 HWRSLLTCIGIVAATNVTYYMLLTYMPSYLSHNLHYKEN-SGVLIIIAIMVGMLFVQPFI 316

Query: 306 GWLSDKVGRKPVLMIGLLLATALYFPIF 333
           G++SDK+GRKP ++ G +    L  P F
Sbjct: 317 GFISDKIGRKPFIIAGSIGLLFLSIPAF 344



 Score = 43.5 bits (101), Expect = 2e-08
 Identities = 26/96 (27%), Positives = 52/96 (54%), Gaps = 2/96 (2%)

Query: 442 MIVALIVALIIISAMCYGPLAALMVELFPTRIRYTSMSLPYHIGNGWFGGFLPTVSFALV 501
           +I A ++ L +I     G +A+ +  +FPT +RY++++  +++ +    G  PT    LV
Sbjct: 354 LIFAGLLILAVILNFFIGVMASTLPAMFPTHLRYSALASAFNV-SVLIAGLTPTAVAWLV 412

Query: 502 VYTGDIFYGLWYPVVITGVSLVVGMMCLRETKDVDL 537
             T D++   +Y +V   V L+ G + ++ET +  L
Sbjct: 413 ESTNDLYMPAYYLMVFAVVGLITG-LTMKETANKPL 447