Pairwise Alignments

Query, 177 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas fluorescens FW300-N1B4

Subject, 173 a.a., KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) from Escherichia coli BW25113

 Score =  114 bits (284), Expect = 1e-30
 Identities = 59/155 (38%), Positives = 102/155 (65%), Gaps = 2/155 (1%)

Query: 8   SLSELYRGHHGWLFGWLRKKLGCPDNAADMAHDTFVKLLGLDTLPTLQEPRAYLLVAANR 67
           +   LY  HHGWL  WL +KL    +A D+A DTF++++  +TL T+++PR++L   A R
Sbjct: 12  TFESLYGTHHGWLKSWLTRKLQSAFDADDIAQDTFLRVMVSETLSTIRDPRSFLCTIAKR 71

Query: 68  LLINQYHRRRVEEETLRSMVVLLDQQAQQGPEQIIAVRQLLGKVLLLLLEELDEKPRKAF 127
           ++++ + R  +E+  L  M+ L+ +     PE+  +  + L ++L  +L+ L+ K R+AF
Sbjct: 72  VMVDLFRRNALEKAYL-EMLALMPEGGAPSPEERESQLETL-QLLDSMLDGLNGKTREAF 129

Query: 128 LMARVDGCSYAEIARHLQVSESSVKQYLAKSLAHC 162
           L++++DG +Y+EIA  L VS SSVK+Y+AK++ HC
Sbjct: 130 LLSQLDGLTYSEIAHKLGVSISSVKKYVAKAVEHC 164