Pairwise Alignments

Query, 400 a.a., Membrane fusion component of tripartite multidrug resistance system from Pseudomonas fluorescens FW300-N1B4

Subject, 387 a.a., EmrKY-TolC multidrug resistance efflux pump, membrane fusion protein component (NCBI) from Escherichia coli BW25113

 Score =  280 bits (716), Expect = 5e-80
 Identities = 150/350 (42%), Positives = 219/350 (62%), Gaps = 4/350 (1%)

Query: 22  RKVMLFALTIVVILAGLGVWGYQEFYGRWNESTDDAYVNGNVVEITPLVTGTVVSIGADD 81
           R+     L +V+ +A  G + Y         STDDAYV GN   I+  V+G+V  +   D
Sbjct: 13  RRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKD 72

Query: 82  GDLVHEGQVLVNFDPNDAEVGLQSAQANLARTVRQVRGLYSNVDGMKAQVNAQQAEVQKA 141
            + V +G +LV+ D  DA + L  A+ NLA  VRQ   LY       A+V + + + Q++
Sbjct: 73  TNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQS 132

Query: 142 QDNFNRRKNLAAGGAISQEELSHARDDLTSAQNALANAKQQLMTTSALVDDTVVSSHPDV 201
            +++NRR  LA  G IS+E L H +D L S++ AL  A Q      ALV +T ++  P V
Sbjct: 133 LEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQV 192

Query: 202 MSAAAQLRQAYLTHARSTLIAPVTGYVAKRSVQLGQRVQPGTALMAVIPLDQLWIDANFK 261
           + AA   ++A+L   R+ + +PVTGY+A+RSVQ+G+ V PG +LMAV+P  Q+W++ANFK
Sbjct: 193 VEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFK 252

Query: 262 ETQLRDMRIGQPVDIEADLYGSDVKYSGTIDSLGAGTGSAFALLPAQNATGNWIKIVQRV 321
           ETQL D+RIGQ V+I +DLYG +V + G +  +  GTG+AF+LLPAQNATGNWIKIVQRV
Sbjct: 253 ETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRV 312

Query: 322 PVRIHINAEELARHPLRVGLSTQVDVNLRDQSGPVLAQQSPQKASFSTSI 371
           PV + ++ +EL  HPLR+GLS    ++ +++       + P+ AS  TS+
Sbjct: 313 PVEVSLDPKELMEHPLRIGLSMTATIDTKNED----IAEMPELASTVTSM 358