Pairwise Alignments

Query, 875 a.a., DNA topoisomerase I (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N1B4

Subject, 892 a.a., DNA topoisomerase I from Agrobacterium fabrum C58

 Score =  429 bits (1103), Expect = e-124
 Identities = 261/669 (39%), Positives = 374/669 (55%), Gaps = 83/669 (12%)

Query: 4   SLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGEGPV 63
           ++V+VESPAKAKTINKYLG+ Y V +S GH+RDLP                   A +G V
Sbjct: 2   NVVVVESPAKAKTINKYLGSGYKVLASFGHVRDLP-------------------AKDGSV 42

Query: 64  LTPKEKARKQLVSRMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREG 123
           L                 PD  ++  +E+     K ++++    K +D ++LATD DREG
Sbjct: 43  L-----------------PDQDFEMSWEVDSASAKRMKDIADAVKSSDGLFLATDPDREG 85

Query: 124 EAIAWHLREAIGGD----DSRYKRVVFNEITKKAIQEAFSKPGELDIDRVNAQQARRFLD 179
           EAI+WH+ + +       D   KRVVFN ITKKA+ +A + P ++D+  V+A  ARR LD
Sbjct: 86  EAISWHVLDLLKKKRVLGDKPVKRVVFNAITKKAVLDAMANPRDIDVPLVDAYLARRALD 145

Query: 180 RVVGYMVSPLLWAKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEVHADLGTAKG- 238
            +VG+ +SP+LW K+    SAGRVQSVA++LV +RE EI  F  EEYW + A L T +G 
Sbjct: 146 YLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDRESEIERFVSEEYWNISALLKTPRGD 205

Query: 239 ----ATVRFDVAREKGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITS 294
                 V  D  R +    K   +A  + AL  L+ ++Y +   E KP    P  PF TS
Sbjct: 206 EFEAKLVSADGKRLQSRGIKTGEDANRLKAL--LEGATYVVDTVEAKPVKRNPGPPFTTS 263

Query: 295 TLQQAASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADAVAMARTYI 346
           TLQQAAS+R+GFG  +TM +AQ+LYE         G ITYMRTD   ++ +A+  AR  I
Sbjct: 264 TLQQAASSRMGFGASRTMQVAQKLYEGIDIGGETVGLITYMRTDGVQIAPEAIDAARLAI 323

Query: 347 EGEFGKKYLPENPNVYSSK-EGAQEAHEAIRPSDANTEPSKLSG-MERDAERLYELIWRQ 404
             +FG++Y+PE    YS+K + AQEAHEAIRP+D    P ++   ++ D  RLY+LIW++
Sbjct: 324 GEQFGERYVPEKARFYSTKAKNAQEAHEAIRPTDFTRTPDQVKRYLDADQLRLYDLIWKR 383

Query: 405 FLACQMLPAQYLSTTVTVGAGD----FELRAKGRILKFDGYTRVMPQIAKPG-------D 453
            +A QM  A+   TTV + A        LRA G +++FDG+        + G       D
Sbjct: 384 GIASQMASAEIERTTVEILADKNGEKAGLRAVGSVIRFDGFIAAYTDQKEDGEQSDDGDD 443

Query: 454 DDVLPDMAQGDAMKLIKLDPTQHFTKPPARYSEASLVKEMEKRGIGRPSTYAAIISTIQD 513
           +  LP +   + +   K++ +QHFT+PP RYSEASL+K+ME+ GIGRPSTYAA + T+ D
Sbjct: 444 EGRLPQINARENLAKQKINASQHFTEPPPRYSEASLIKKMEELGIGRPSTYAATLKTLSD 503

Query: 514 RGYVALHNRRFYSEKMGDIVTERLAESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDE 573
           R Y+ +  R+      G +VT  L   F+  ++Y FTA +EE LD ++ GE DWK VL +
Sbjct: 504 REYIVIDKRKLIPHSRGRLVTAFLESFFTKYVEYDFTAALEEKLDRISAGELDWKQVLRD 563

Query: 574 FYGDFKKKLEVAESPE--GGMRANQPVMTDIP------------CLLCGRP-MQIRTAST 618
           F+ DF  ++E  +       + A   V+  +             C +CG   + ++    
Sbjct: 564 FWKDFFAQIEDTKELRVTNVLDALNEVLAPLVFPKREDGSDPRICQVCGTGNLSLKLGKY 623

Query: 619 GVFLGCSGY 627
           G F+GCS Y
Sbjct: 624 GAFVGCSNY 632



 Score = 34.7 bits (78), Expect = 3e-05
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 715 CDKCGS-EMQLKTGRFGKFFGCTN-ATCKNTRKLLKSGDAA 753
           C  CG+  + LK G++G F GC+N   C  TR+L   G  A
Sbjct: 608 CQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLTSDGAEA 648