Pairwise Alignments

Query, 856 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N1B4

Subject, 1098 a.a., histidine kinase from Pseudomonas simiae WCS417

 Score =  364 bits (935), Expect = e-104
 Identities = 222/564 (39%), Positives = 321/564 (56%), Gaps = 22/564 (3%)

Query: 293  TSLDLSNQALEASEERFRAVAEAASDWIWETD-DQHCITYLSGRFSTVTGFSDQQWLGQN 351
            T    S  AL+ASEE+F     ++ D I  T+ D      ++  F  +TG+  ++ +G  
Sbjct: 523  TQQQRSEAALKASEEKFAKAFHSSPDAISITERDTGRYVEVNDGFCRLTGYRAEEAIGLT 582

Query: 352  IGQL-LNCETMPLSLWLNKLDEEQAVSHLRCSYRDQSGQQRVCRVSARPI---QRKGALL 407
            + Q+ +  +    +  L +L  +  +++L   + ++ G+     VS  PI   +    LL
Sbjct: 583  LYQIGIWADENQRAALLAELQIKGRINYLEMLWHNKRGELLAVEVSVEPITLNETPCLLL 642

Query: 408  GFRGTASDITDEVAAHAQIQHLSMHDALTGLPNRNKLARYLEDALAL-KEQSTALTLLMI 466
                TA D++    A AQI+HL+ HD LT LPNR  L   L   +AL K  +    LL +
Sbjct: 643  ----TARDVSLLKNAQAQIRHLAYHDPLTNLPNRALLMDRLSQQIALLKRHNLRGALLFL 698

Query: 467  DLDNFKPINDSLGHPAGDAVLLEVAIRLRECTRDIDLVARLGGDEFVLVLHGMD-SHAEI 525
            DLD+FK INDSLGHP GD VL  V  RL    R  D VARLGGDEFV++L G+D +  E+
Sbjct: 699  DLDHFKHINDSLGHPVGDTVLKIVTARLEASVRMEDTVARLGGDEFVVLLSGLDGTRTEV 758

Query: 526  DRFCERLLDSLHQ----PIHYDHHTLHIGASIGIALSRRQGHLPEELIRCADIALYQAKS 581
                + L D+L +    P+  D H L +  SIG+AL    G  P +L++ ADIALY+AK 
Sbjct: 759  SNQVQELADTLRELLSEPMFLDGHRLQVTPSIGVALIPDHGSTPADLLKRADIALYRAKD 818

Query: 582  NGKKTWCYFAAHMNDQIQHRRQLESDLRQAIKNNEFVMHYQPRYHVDGKQIVSVEALLRW 641
            +G+ T   F   M      R ++E+DLR A+   EF +HYQP+    G +IV  EAL+RW
Sbjct: 819  SGRNTTQMFHNSMQKTASERLRMETDLRLALSRGEFSVHYQPQVDARGNRIVGAEALVRW 878

Query: 642  QHPVQGLLNPDAFIPLAEQTDLIVPLGRWVLREACET-------ALTWPGAMMVSVNLSP 694
            QHP  G  +P  FI + E + LI+ +G W+L EAC          L  P    + VN+SP
Sbjct: 879  QHPQLGAQSPSEFIKVLEDSGLILEVGTWILDEACAAFQQLIAEGLVDPLNFSLCVNISP 938

Query: 695  VQFARSDVIEDVREALIQSRLPASRLELEITENVMLIDVDGALATMNALKELGVRLNMDD 754
             QF ++D +E V  +L Q +LP S L+LEITE +++ ++D  ++ M  LK+LGV   MDD
Sbjct: 939  RQFRQNDFVERVERSLKQHKLPFSLLKLEITEGIVIQNLDDTISKMRRLKKLGVSFAMDD 998

Query: 755  FGTGYSSLGYLRTYPFDGIKIDKRFIASMSNGSNDRAVVQAIINLGKAMGLTVTAEGVET 814
            FGTGYSSL YL+  P D +KID+ F+   ++  ND  +++AI+ + +++ L V AEGVET
Sbjct: 999  FGTGYSSLTYLKRLPVDALKIDQSFVRDATHDPNDAEIIRAIVAMARSLNLEVIAEGVET 1058

Query: 815  LEQLDFLISDQCHEVQGFYLSRPV 838
             +QL FL    CH  QG+  SRP+
Sbjct: 1059 QDQLAFLQGLGCHLYQGYLHSRPL 1082



 Score = 37.0 bits (84), Expect = 6e-06
 Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 22/149 (14%)

Query: 293 TSLDLSNQA-----LEASEERFRAVAEAASDWIWETDDQHCITYLSGRFSTVTGFSDQQW 347
           T LD+++Q      L ASEE+F ++ + + D I       C+T L G        +  Q 
Sbjct: 393 TLLDITDQVEREQRLTASEEKFASLFQVSPDPI-------CVTCLDGGTFIEINPAFTQT 445

Query: 348 LGQNIGQLLNCETMPLSLW---------LNKLDEEQAVSHLRCSYRDQSGQQRVCRVSAR 398
            G    ++++     + LW         + ++  EQA+S++      ++GQ   C +S+R
Sbjct: 446 FGWTAAEVIDKSAEQIGLWDESSKRLQRIERVIREQALSNVAIVAHHKNGQALTCVISSR 505

Query: 399 PIQRKGALLGFRGTASDITDEVAAHAQIQ 427
            I + G       T  DIT +  + A ++
Sbjct: 506 LI-KVGDQPCIVTTLRDITQQQRSEAALK 533