Pairwise Alignments

Query, 856 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Pseudomonas fluorescens FW300-N1B4

Subject, 1276 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  355 bits (910), Expect = e-101
 Identities = 216/558 (38%), Positives = 315/558 (56%), Gaps = 12/558 (2%)

Query: 296  DLSNQALEASEERFRA-VAEAASDWIWETDDQHCITYLSGRFSTVTGFSDQQWLGQNIGQ 354
            D+S Q     + R  A V E ++  I  TD    I   +  FS V+G++  + L Q  G 
Sbjct: 704  DISQQRRAEKDLRMAATVFEHSTSAILITDPAGYIVQANEAFSRVSGYAVSEVLDQLPGM 763

Query: 355  LLNCETMPLSL-WLNKLDEEQAVSHLRCSYRDQSGQQRVCRVSARPI-QRKGALLGFRGT 412
            L   E     L ++ K   ++         + + G      V    +   +G L  +   
Sbjct: 764  LTVDEQQEGHLRYVVKQLHQRGSWEGEVWLKRRDGDHYPAWVGITAVLDDEGDLASYVCF 823

Query: 413  ASDITDEVAAHAQIQHLSMHDALTGLPNRNKLARYLEDALALKEQSTALTLLM-IDLDNF 471
             +DI++  A+  +I  L+ +DALT LPNR      L +AL   E+  A  +LM +DLD F
Sbjct: 824  FTDISERKASEQRIHRLAYYDALTHLPNRTLFQDRLYNALQQAERQKAWVVLMFLDLDRF 883

Query: 472  KPINDSLGHPAGDAVLLEVAIRLRECTRDIDLVARLGGDEFVLVLHGMDSHA----EIDR 527
            KPINDSLGH AGD +L ++A+RL  C  D D VAR+GGDEF L+L    +          
Sbjct: 884  KPINDSLGHAAGDRMLKDMALRLLACVDDDDTVARMGGDEFTLLLQPRPTREMALNRAIH 943

Query: 528  FCERLLDSLHQPIHYDHHTLHIGASIGIALSRRQGHLPEELIRCADIALYQAKSNGKKTW 587
              E +L SL +P   ++    + ASIGIALS + G    +L++ AD A+Y AK  GK  +
Sbjct: 944  VAENILGSLVRPFVLENREFFVTASIGIALSPQDGSELSQLMKNADTAMYHAKERGKNNF 1003

Query: 588  CYFAAHMNDQIQHRRQLESDLRQAIKNNEFVMHYQPRYHVDGKQIVSVEALLRWQHPVQG 647
             ++ A MN     R +LESDLR A++ NEF+++YQP++  DGK++   EALLRW+HP +G
Sbjct: 1004 QFYQAEMNASALERLELESDLRHAMEQNEFILYYQPQFSGDGKRLTGAEALLRWRHPTRG 1063

Query: 648  LLNPDAFIPLAEQTDLIVPLGRWVLREACETALTWPGAMM----VSVNLSPVQFARSDVI 703
            L+ P  FIP+ E+  L+V +G WVLREA      W  A +    VSVN+S  QF+   + 
Sbjct: 1064 LVPPGDFIPVIEELGLVVDVGDWVLREASRQLKAWHKAKVRVPKVSVNISARQFSDGQLG 1123

Query: 704  EDVREALIQSRLPASRLELEITENVMLIDVDGALATMNALKELGVRLNMDDFGTGYSSLG 763
              +   L +S LP + LELE+TE++++ +V+ AL  + +LK LG+ + +DDFGTGYSSL 
Sbjct: 1124 TRIANILEESGLPPACLELELTESILMREVNEALQILASLKNLGLSIAVDDFGTGYSSLN 1183

Query: 764  YLRTYPFDGIKIDKRFIASMSNGSNDRAVVQAIINLGKAMGLTVTAEGVETLEQLDFLIS 823
            YL+ +P D +KID+ F+  +  G  D  + +AII +  ++ L V AEGVET EQL+FL  
Sbjct: 1184 YLKQFPIDVLKIDRTFVDGLPEGEQDAQIARAIIAMAHSLNLAVIAEGVETHEQLEFLRE 1243

Query: 824  DQCHEVQGFYLSRPVDRH 841
              C EVQG+   RP+  H
Sbjct: 1244 HGCDEVQGYLFGRPMPAH 1261



 Score = 39.7 bits (91), Expect = 1e-06
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 298 SNQALEASEERFRAVAEAASDWIWETDDQHCITYLSGRFSTVTGFSDQQWLGQN 351
           ++Q+L  SE+R+R +AE+ SD I+ TD+Q  + Y+S    +V G+    W+  N
Sbjct: 571 ASQSLRDSEQRYRMLAESISDVIFSTDNQLKLNYVSPSVQSVLGY-QADWIFAN 623