Pairwise Alignments

Query, 252 a.a., Transcriptional regulator, AraC family from Pseudomonas fluorescens FW300-N1B4

Subject, 249 a.a., HTH-type transcriptional activator RhaS from Pseudomonas sp. RS175

 Score =  418 bits (1075), Expect = e-122
 Identities = 211/248 (85%), Positives = 227/248 (91%)

Query: 1   MRPILTLRQYTHDLIVHSHDHAQLVFGLSGALDFEVEGHGSQVVQQSFVVVPSGAHHACD 60
           MRPILTLRQY+ DLIVHSHDH QLVFGLSGALDFEVEG GSQVV+QSFVVVP+GAHHACD
Sbjct: 1   MRPILTLRQYSQDLIVHSHDHPQLVFGLSGALDFEVEGCGSQVVRQSFVVVPAGAHHACD 60

Query: 61  SAHGSRCLVLDVPSDQWVSQSLGDHAEASRRLLDNAGRLSLDAGQSQLVSWLAGSQISDP 120
           S  GSRCLVLDVP   W+ Q LGDHA+ASRRLLD + RL LDAGQSQLVSWLAGS++ DP
Sbjct: 61  SPKGSRCLVLDVPGGDWLDQCLGDHADASRRLLDTSARLPLDAGQSQLVSWLAGSRMDDP 120

Query: 121 LIAQQGAVLLLASLNNTKPDSVGGRRLPYAALNAHIDQYAAYPLQVADLARIAGLSSARL 180
           LIA+QGAVLLLASLN+ +P   GGRRLPYAAL+AHIDQYAAYPLQVADLA++AGLSSARL
Sbjct: 121 LIARQGAVLLLASLNDARPAPTGGRRLPYAALDAHIDQYAAYPLQVADLAQVAGLSSARL 180

Query: 181 HARFVAECGQTPMDYIRSRRLHIAVGLLRDSALPIGEIACRVGYSSQSAFAAAVLREFGA 240
           HARFVAECGQTPM+YIRSRRLH AVGLLRDS LPIGEIA RVGYSSQSAFAAAVLREFGA
Sbjct: 181 HARFVAECGQTPMEYIRSRRLHKAVGLLRDSDLPIGEIAHRVGYSSQSAFAAAVLREFGA 240

Query: 241 SPGKLRRE 248
           SPGKLRR+
Sbjct: 241 SPGKLRRQ 248