Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 321 a.a., Cytochrome c from Rhodanobacter sp. FW510-T8

 Score = 99.0 bits (245), Expect = 2e-25
 Identities = 60/157 (38%), Positives = 91/157 (57%), Gaps = 9/157 (5%)

Query: 323 AYLKESILDPKARLVQGYPPVMVAYTLTEDELGAVVALIKSLGAAQQEPSASEKLDRGDD 382
           AYLK +     A   +G+PP + A    ++ L   +  ++++  A   P A       D 
Sbjct: 170 AYLKYT----SAMNTEGWPPRVEAEAGPDERLRLALG-VQAIAPAAAAPVAPPAAGPADP 224

Query: 383 LATQGQRLAESLGCLACHSVDGSKGVGPSWQGLYGETVTLADGTSIKADEGYIKDSILNP 442
           +A +G +LA+  GC ACHS    + VGP W GLYG  V+LADG+S+ AD+ Y+ +SI  P
Sbjct: 225 VA-RGAQLAKDNGCTACHSTTRQRLVGPGWGGLYGSRVSLADGSSVVADDAYLAESIRQP 283

Query: 443 GAKIVKGY-AAVMPAF--TLSDQELNALIAFIKSKAK 476
            AKIV GY A+VMP +   L + E++A++A++ S  K
Sbjct: 284 NAKIVAGYPASVMPGYDTLLKNDEVDAIVAYLHSLEK 320



 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 48/112 (42%), Positives = 60/112 (53%), Gaps = 4/112 (3%)

Query: 256 PTFAQTLTTAAKPSQDSVLEKGRLLVEKYGCGACHSQDGSTRLGPGWKGLYGRTEQFADG 315
           P  A  +   A    D V  +G  L +  GC ACHS      +GPGW GLYG     ADG
Sbjct: 208 PAAAAPVAPPAAGPADPVA-RGAQLAKDNGCTACHSTTRQRLVGPGWGGLYGSRVSLADG 266

Query: 316 TRALVDEAYLKESILDPKARLVQGYP-PVMVAY--TLTEDELGAVVALIKSL 364
           +  + D+AYL ESI  P A++V GYP  VM  Y   L  DE+ A+VA + SL
Sbjct: 267 SSVVADDAYLAESIRQPNAKIVAGYPASVMPGYDTLLKNDEVDAIVAYLHSL 318



 Score = 25.0 bits (53), Expect = 0.004
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 33/120 (27%)

Query: 384 ATQGQRLAESLGCLACHSVDGS------------KGVGPSWQGLY----GETVTLA---- 423
           A  G+R+ ++  C+ CH++ G+            +  GP+W   +    G   T A    
Sbjct: 56  AEDGKRVFQAYNCMGCHTMVGNGAYLGPDLTREYEQAGPAWLAAFLPSAGSWPTAAAVRA 115

Query: 424 -----------DGTSIKADEGYIKDSILNPGAKIVKGYAAVMPAFTLSDQELNALIAFIK 472
                         +I+A E    D+      +   G  + MP   L+  E   LIA++K
Sbjct: 116 QLQDPVQHADSGAGTIEAYESKFPDAATRVARR--GGKPSNMPNLPLTRDETGQLIAYLK 173