Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 375 a.a., cytochrome c oxidase subunit 2 from Pseudomonas putida KT2440

 Score = 92.8 bits (229), Expect = 2e-23
 Identities = 67/273 (24%), Positives = 123/273 (45%), Gaps = 13/273 (4%)

Query: 25  ATPAASNWGSIDTTLFITLIISGIFFIAITVFMAVAVMRYRHKEGSRAHYQPESKKLETW 84
           AT  ++    +  T+F   +I GI      +F ++ +  +R   G +A +  E   +E  
Sbjct: 32  ATEVSNAVFDLHMTIFWICVIIGIVVFG-AMFWSMVI--HRRSTGQQAAHFHEHTWVEIL 88

Query: 85  LIIVTSIGIAAMLAPGLVVYSDFINVPKNAYELEVVAQQWQWAFRFAGQDGKLGKSDIKF 144
             +V  + +  M  P      D  +  ++  +++V   QW+W +++ GQD +       F
Sbjct: 89  WTVVPFLILVVMAIPATKTLIDIYDASESDIDVQVTGYQWKWHYKYLGQDVEF------F 142

Query: 145 VDFTNPLG-LDPKDPVGQDDVLIKSNEVRLPLDQPVKVLLRSKDVLHNFYIPQIRSKMDM 203
            +   P   +  K P  +  +L     + LP+   V+ L+ + DV+H++++P    K D 
Sbjct: 143 SNLATPTDQIHNKAPKDEHYLLEVDQPLVLPVGAKVRFLVTAADVIHSWWVPAFAVKRDA 202

Query: 204 VPGMVSYFWFTPTKTGKYEILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFAQTL- 262
           +PG V+  W    K G Y   C E CG  H  M   + V+ +  +D WL  +   A  L 
Sbjct: 203 IPGFVNEAWTRIEKPGIYRGQCTELCGKDHGFMPVVVEVKSKADYDTWLGERKAEAAKLK 262

Query: 263 -TTAAKPSQDSVLEKGRLLVEKYGCGACHSQDG 294
             T+ + + + ++E+G   V    C ACH  +G
Sbjct: 263 ELTSKEWTLEELVERGD-KVYHTTCVACHQAEG 294