Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 366 a.a., cytochrome c oxidase, subunit II from Pseudomonas sp. S08-1

 Score = 86.7 bits (213), Expect = 1e-21
 Identities = 71/323 (21%), Positives = 146/323 (45%), Gaps = 34/323 (10%)

Query: 48  IFFIAITVFMAV------AVMRYRHKEGSRAHYQPESKKLETWLIIVTSIGIAAMLAPGL 101
           IF+I + + + V      +++ +R   G +  +  ES  +E    +V  + + AM  P  
Sbjct: 38  IFWICVVIGVVVFGVMFWSMLIHRRSTGQQPAHFHESTTVEILWTVVPFVILVAMAVPAT 97

Query: 102 VVYSDFINVPKNAYELEVVAQQWQWAFRFAGQDGKLGKSDIKFVDFTNPLGLDPKDPVGQ 161
               D  +  ++  +++V   QW+W +++ GQD +       F +   P           
Sbjct: 98  KTLIDIYDTSESELDIQVTGYQWKWHYKYLGQDLEF------FSNLATPSDQIYNKAEKD 151

Query: 162 DDVLIKSNE-VRLPLDQPVKVLLRSKDVLHNFYIPQIRSKMDMVPGMVSYFWFTPTKTGK 220
           +  L++ ++ + +P+   V+ L+ + DV+H++++P +  K D +PG V+  W    + G 
Sbjct: 152 EHYLLEVDQPLVVPVGTKVRFLITAADVIHSWWVPALAVKKDAIPGFVNESWTRIEEPGI 211

Query: 221 YEILCAEYCGLGHYNMRGQMIVEEQGAFDQWLNSQPTFAQTL--TTAAKPSQDSVLEKGR 278
           Y   C E CG  H  M   +  + +  F +WL  +   A  +   T+ + +++ ++ +G 
Sbjct: 212 YRGQCTELCGKDHGFMPVVVEAKSKEDFAKWLAERKEEAAKIKELTSKEWTREELMARGE 271

Query: 279 LLVEKYGCGACHSQDGSTRLGPGWKGLYGRTEQFADGTRALVDEAYLKESILDPKARLVQ 338
              +   C +CH  +G   L P +  L G   + A G  A+ D  ++          +VQ
Sbjct: 272 KAYQT-NCASCHQPNGE-GLPPMFPALKG--SKIATG--AVADHIHI----------VVQ 315

Query: 339 GYPPVMVA---YTLTEDELGAVV 358
           G P   +A     L+E ++ A++
Sbjct: 316 GKPGTAMAAFGKQLSEVDIAAII 338