Pairwise Alignments

Query, 488 a.a., Alternative cytochrome c oxidase polypeptide CoxM (EC 1.9.3.1) from Pseudomonas fluorescens FW300-N1B4

Subject, 375 a.a., hypothetical protein from Pseudomonas sp. RS175

 Score = 99.8 bits (247), Expect = 1e-25
 Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 15/292 (5%)

Query: 10  IVIASVLFHVLAPW--HATPAASNWGSIDTTLFITLIISGIFFIAITVFMAV--AVMRYR 65
           +++ S+     A W  +  P A+   +    L +T+    +  I I VF A+  ++M +R
Sbjct: 11  LLLCSIFSQAQAAWTVNMAPGATQISNAVFDLHMTIFWICVV-IGIIVFGAMFWSMMMHR 69

Query: 66  HKEGSRAHYQPESKKLETWLIIVTSIGIAAMLAPGLVVYSDFINVPKNAYELEVVAQQWQ 125
              G  A +  E+ ++E    IV  + + AM  P         +  ++  ++++   QW+
Sbjct: 70  RSTGQNAAHFHENTRVEILWTIVPFLILVAMAVPATATLIKMYDSSESEIDIQITGYQWK 129

Query: 126 WAFRFAGQDGKLGKSDIKFVDFTNPLG-LDPKDPVGQDDVLIKSNEVRLPLDQPVKVLLR 184
           W +++ GQD +       F +   P   +  +   G+  +L     + LP+D  V+ L+ 
Sbjct: 130 WHYKYLGQDVEF------FSNLATPTEQIHNQSAKGEHYLLEVDKPLVLPVDAKVRFLVT 183

Query: 185 SKDVLHNFYIPQIRSKMDMVPGMVSYFWFTPTKTGKYEILCAEYCGLGHYNMRGQMIVEE 244
           S DV+H++++P    K D +PG V+  W    K G Y   CAE CG  H  M   + V+ 
Sbjct: 184 SADVIHSWWVPAFAVKRDAIPGFVNEAWTRVDKPGLYRGQCAELCGKDHGFMPIVVEVKS 243

Query: 245 QGAFDQWLNSQPTFAQTL--TTAAKPSQDSVLEKGRLLVEKYGCGACHSQDG 294
           +  +++WL  +   A  L   T+ + + + + E+G   V    C ACH  +G
Sbjct: 244 KPDYEKWLGERKAEAAQLKELTSKEWTLEELKERGD-KVYHTTCVACHQAEG 294