Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1050 a.a., Probable efflux pump membrane transporter TtgB from Pseudomonas putida KT2440

 Score = 1778 bits (4604), Expect = 0.0
 Identities = 912/1054 (86%), Positives = 977/1054 (92%), Gaps = 6/1054 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAI+VTYPGASAQTVQDT
Sbjct: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAIAVTYPGASAQTVQDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            VVQVIEQQLNGIDNLRYVSSESNSDG+MTITATFEQGTN DTAQVQVQNKLNLATPLLPQ
Sbjct: 61   VVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNLATPLLPQ 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQQQGIRVTK+VKNFL+VIG+VS DGSMTKDDL+NYIVSNMQDPISRTAGVGDFQVFGA
Sbjct: 121  EVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVGDFQVFGA 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QYAMRIWLDPAKLN + LTPVDVKTA+AAQNVQVSSGQLGGLPALPG QLNATIIGKTRL
Sbjct: 181  QYAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNATIIGKTRL 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            QTAEQF++ILLKVNKDGSQVR+GDVA+VGLGGENY++SAQFNG PASGLAVKLA GANAL
Sbjct: 241  QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANAL 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
            DTAKALR TI  L+PFFP G++ VFPYDTTPVVTESI GV+ TL+EA+VLVFLVM+LFLQ
Sbjct: 301  DTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRAT+ITTMTVPVVLLGTFGILAA GFSINTLTMF MVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
            SEEGL PKEATK+SM QIQGALVGIALVLSAVLLPMAFF GSTGVIY+QFSITIVSAM L
Sbjct: 421  SEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SVLVALIFTPALCATMLK + KGEH T K GFFGWFNR+FDR V  YER VG IL +K P
Sbjct: 481  SVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRNFDRSVNGYERSVGAILRNKVP 540

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
            +LLAY +IVVGMIWLF RIPTAFLPEEDQGVLFAQVQTPAGSS++RTQVVVD+MRE+LL+
Sbjct: 541  FLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTPAGSSAERTQVVVDQMREYLLK 600

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNADNSVFKLAARAQQHFF 660
                  E D V+SVFTV GFNFAGRGQSSGMAFIMLKPW+ER+ +NSVF LA RAQQHFF
Sbjct: 601  -----DEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSKENSVFALAQRAQQHFF 655

Query: 661  TFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQSKVLSQVR 720
            TFRDAMVFAFAPPAVLELGNATGFDVFLQDR G+GHEKLMEARNQFL  AAQSK+LS VR
Sbjct: 656  TFRDAMVFAFAPPAVLELGNATGFDVFLQDRGGVGHEKLMEARNQFLAKAAQSKILSAVR 715

Query: 721  PNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQGLP 780
            PNGLNDEPQYQL IDDE+ASALGVT+ DINNTLSIALG+SYVNDFIDRGRVKKVYIQG P
Sbjct: 716  PNGLNDEPQYQLTIDDERASALGVTIADINNTLSIALGASYVNDFIDRGRVKKVYIQGEP 775

Query: 781  GARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGHST 840
             ARMSPEDL+KWYVRN AG MVPFSSFAKGEW YGSPKL+RYNGVEAMEILGAPAPG+ST
Sbjct: 776  SARMSPEDLQKWYVRNGAGEMVPFSSFAKGEWTYGSPKLSRYNGVEAMEILGAPAPGYST 835

Query: 841  GEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWSI 900
            GEAMAEVE +A +LP+G+G SWTG+SYEE+LSGSQ PAL+ALS+L VFLCLAALYESWSI
Sbjct: 836  GEAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPALFALSVLFVFLCLAALYESWSI 895

Query: 901  PIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQGR 960
            PIAV+LVVPLGIIGAL+ATS+RGLSNDVYF VGLLTTIGLAAKNAILIVEFAKELHEQGR
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKELHEQGR 955

Query: 961  SLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITATVLA 1020
            SL DAAIEACRMRLRPIIMTSLAF+LGVVPL I++GAG+GSQHAIGTGVIGGMI+ATVLA
Sbjct: 956  SLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISATVLA 1015

Query: 1021 IFWVPLFFVTVSSMGQRKVADQDDAIE-PSKEAG 1053
            IFWVPLFFV VSS+   K  ++D   E P  EAG
Sbjct: 1016 IFWVPLFFVAVSSLFGSKEPEKDVTPENPRYEAG 1049