Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1037 a.a., RND efflux system, inner membrane transporter CmeB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1337 bits (3459), Expect = 0.0
 Identities = 681/1034 (65%), Positives = 831/1034 (80%), Gaps = 9/1034 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            M+ FFI RPIFAWV+A+++M+ GAL+I++LP+ QYP+IAPPA++IS TYPGA AQTVQDT
Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVSISATYPGADAQTVQDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ +NGIDNL Y+SS S+S G++TIT TF+ GT+ D AQVQVQNKL LATPLLPQ
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQQQGI V KS  +FLMV G VS + + T+DD+S+Y+ SN++D ISR  GVGD Q+FGA
Sbjct: 121  EVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGVGDVQLFGA 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QYAMRIWLD   LN Y LTPVDV   +  QN Q+++GQLGG PALPGQQLNA+II +TRL
Sbjct: 181  QYAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            +  E+F  + L+VN DGS V + DVA + LGGENY++ A+ NG PASGL +KLA GANAL
Sbjct: 241  KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANAL 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
            DTA A++  +  L+PFFP+GM+VV+PYDTTP V  SI  VV+TL EAI+LVFLVM+LFLQ
Sbjct: 301  DTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RAT+I T+ VPVVLLGTF +LAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
             E+ LSP+EAT+KSM QIQGALVGIA+VLSAV +PMAFF GSTG IY+QFSITIVSAMAL
Sbjct: 421  MEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SVLVALI TPALCAT+LK +   EH   K GFFGWFN  FD  V  Y   V  I+ +   
Sbjct: 481  SVLVALILTPALCATLLKPV-SAEHHEKKSGFFGWFNTRFDHSVNHYTNSVSGIVRNTGR 539

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
            YL+ YL+IVVGM  LF R+PT+FLPEEDQGV    +Q P+G++ +RTQ V+D++  + L 
Sbjct: 540  YLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLPSGATQERTQKVLDQVTHYYL- 598

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNA-DNSVFKLAARAQQHF 659
                  E   V SVFTV GF+F+G+GQ+SGMAF+ LKPWEERN  +NSV  + ARA + F
Sbjct: 599  ----NNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNGEENSVEAVIARATRAF 654

Query: 660  FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQ-SKVLSQ 718
               RD +VF F  PA++ELG ATGFD  L D+ G+GH+ L +ARNQ LGM A+   +L +
Sbjct: 655  SQIRDGLVFPFNMPAIVELGTATGFDFELIDQGGLGHDALTKARNQLLGMVAKHPDLLVR 714

Query: 719  VRPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQG 778
            VRPNGL D PQ++L++D EKA ALGV+L+DIN T+S ALG  YVNDFIDRGRVKKVY+Q 
Sbjct: 715  VRPNGLEDTPQFKLDVDQEKAQALGVSLSDINETISAALGGYYVNDFIDRGRVKKVYVQA 774

Query: 779  LPGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGH 838
                RM P D+   YVR++ G MVPFS+F+   WIYGSP+L RYNG+ +ME+LG  APG 
Sbjct: 775  DAQFRMLPGDINNLYVRSANGEMVPFSTFSSARWIYGSPRLERYNGMPSMELLGEAAPGR 834

Query: 839  STGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESW 898
            STGEAM+ +E LA +LP G+G  WTG+SY+ERLSG+QAPALYA+SL++VFLCLAALYESW
Sbjct: 835  STGEAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESW 894

Query: 899  SIPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHE- 957
            SIP +VMLVVPLG++GAL+A S+RGL+NDVYFQVGLLTTIGL+AKNAILIVEFAK+L E 
Sbjct: 895  SIPFSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEK 954

Query: 958  QGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITAT 1017
            +GR L +A +EA RMRLRPI+MTSLAF+LGV+PL IS GAGSG+Q+A+GTGV+GGM+TAT
Sbjct: 955  EGRGLIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTAT 1014

Query: 1018 VLAIFWVPLFFVTV 1031
            +LAIF+VP+FFV V
Sbjct: 1015 LLAIFFVPVFFVVV 1028