Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1034 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113

 Score = 1306 bits (3381), Expect = 0.0
 Identities = 667/1034 (64%), Positives = 818/1034 (79%), Gaps = 9/1034 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            M+ FFI RPIFAWV+A+++M+ GAL+IL+LP+ QYP+IAPPA+++S  YPGA AQTVQDT
Sbjct: 1    MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVSVSANYPGADAQTVQDT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ +NGIDNL Y+SS S+S G++TIT TF+ GT+ D AQVQVQNKL LATPLLPQ
Sbjct: 61   VTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQ 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
            EVQQQGI V KS  ++LMV G VS +   T+DD+S+Y+ SN++D +SR  GVGD Q+FGA
Sbjct: 121  EVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGA 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QYAMRIWLD   LN Y LTPVDV   +  QN Q+++GQLGG PALPGQQLNA+II +TR 
Sbjct: 181  QYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRF 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            +  E+F  + L+VN DGS VR+ DVA V LGGENY++ A+ NG PA+GL +KLA GANAL
Sbjct: 241  KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANAL 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
            DTAKA++  +  L+PFFP+GM+V++PYDTTP V  SI  VV+TL EAI+LVFLVM+LFLQ
Sbjct: 301  DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            N RAT+I T+ VPVVLLGTF ILAAFG+SINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361  NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
             E+ L PKEAT+KSM QIQGALVGIA+VLSAV +PMAFF GSTG IY+QFSITIVSAMAL
Sbjct: 421  MEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMAL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SVLVALI TPALCAT+LK +   EH   K GFFGWFN +FD  V  Y   VG IL     
Sbjct: 481  SVLVALILTPALCATLLKPV-SAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGR 539

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
            YLL Y +IV GM+ LF R+P++FLPEEDQGV    +Q PAG++ +RTQ V+D++ ++ L+
Sbjct: 540  YLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLK 599

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNAD-NSVFKLAARAQQHF 659
                  E   V SVFTV GF+F+G+ Q++GMAF+ LKPWEERN D NS   +  RA+   
Sbjct: 600  -----NEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDENSAEAVIHRAKMEL 654

Query: 660  FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQSKV-LSQ 718
               RD  V  F  PA++ELG ATGFD  L D+AG+GH+ L +ARNQ LGMAAQ    L  
Sbjct: 655  GKIRDGFVIPFNMPAIVELGTATGFDFELIDQAGLGHDALTQARNQLLGMAAQHPASLVS 714

Query: 719  VRPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQG 778
            VRPNGL D  Q++LE+D EKA ALGV+L+DIN T+S ALG +YVNDFIDRGRVKK+Y+Q 
Sbjct: 715  VRPNGLEDTAQFKLEVDQEKAQALGVSLSDINQTISTALGGTYVNDFIDRGRVKKLYVQA 774

Query: 779  LPGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGH 838
                RM PED+ K YVR++ G MVPFS+F    W+YGSP+L RYNG+ +MEI G  APG 
Sbjct: 775  DAKFRMLPEDVDKLYVRSANGEMVPFSAFTTSHWVYGSPRLERYNGLPSMEIQGEAAPGT 834

Query: 839  STGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESW 898
            S+G+AMA +E LA KLPAG+G  WTG+SY+ERLSG+QAPAL A+S ++VFLCLAALYESW
Sbjct: 835  SSGDAMALMENLASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESW 894

Query: 899  SIPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHE- 957
            SIP++VMLVVPLGI+G L+A ++    NDVYF VGLLTTIGL+AKNAILIVEFAK+L E 
Sbjct: 895  SIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEK 954

Query: 958  QGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITAT 1017
            +G+ + +A + A RMRLRPI+MTSLAF+LGV+PLAIS GAGSG+Q+A+G GV+GGM++AT
Sbjct: 955  EGKGVVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSAT 1014

Query: 1018 VLAIFWVPLFFVTV 1031
            +LAIF+VP+FFV +
Sbjct: 1015 LLAIFFVPVFFVVI 1028