Pairwise Alignments

Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4

Subject, 1037 a.a., aminoglycoside/multidrug efflux system (NCBI) from Escherichia coli BW25113

 Score = 1217 bits (3148), Expect = 0.0
 Identities = 610/1032 (59%), Positives = 783/1032 (75%), Gaps = 7/1032 (0%)

Query: 1    MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
            M+ FFIDRPIFAWV+A+++ L G L+I  LP+ QYP +APP + ++  YPGASAQT+++T
Sbjct: 1    MANFFIDRPIFAWVLAILLCLTGTLAIFSLPVEQYPDLAPPNVRVTANYPGASAQTLENT 60

Query: 61   VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
            V QVIEQ + G+DNL Y+SS+S+  G  ++T +F+ GT+ D A  QVQN+L  A   LPQ
Sbjct: 61   VTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ 120

Query: 121  EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
             VQ QG+ V K+    ++ I  VS DGSM K D+++Y+ SN+QDP+SR  GVGD   +G+
Sbjct: 121  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 180

Query: 181  QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
            QY+MRIWLDPAKLN++ +T  DV  AI +QN Q++ GQLGG P++  Q LNATI  ++ L
Sbjct: 181  QYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSLL 240

Query: 241  QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
            QT EQF+ I L+VN+DGS+VR+GDVA V +G E Y   ++FNG PASGL VKLA+GAN +
Sbjct: 241  QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEM 300

Query: 301  DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
             TA+ + N +D L  +FP G+E    Y+TT  V  SI+ VV+TL+EAI LVFLVM+LFLQ
Sbjct: 301  ATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQ 360

Query: 361  NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
            NFRAT+I T+ VPVVL+GTF +L AFG+S+NTLTMF MVLAIGLLVDDAIVVVENVER+M
Sbjct: 361  NFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENVERIM 420

Query: 421  SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
            SEEGL+P+EAT+KSMGQIQGALVGIA+VLSAV +PMAFF G+TG IY+QFSITIV+AM L
Sbjct: 421  SEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVL 480

Query: 481  SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
            SVLVA+I TPALCAT+LK + KGEH   K GFF WFN+ F+R  + YE+GV  IL     
Sbjct: 481  SVLVAMILTPALCATLLKPLKKGEHHGQK-GFFAWFNQMFNRNAERYEKGVAKILHRSLR 539

Query: 541  YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
            +++ Y++++ GM++LF R+PT+FLP ED+G+    VQ P+GS+ Q+T  VV+++ ++   
Sbjct: 540  WIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFT 599

Query: 601  PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEERNADNSV-FKLAARAQQHF 659
                  E D + SVF   G    G GQ+    FI LK W ER++     F +  RA + F
Sbjct: 600  -----HEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAIIERATKAF 654

Query: 660  FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQSKVLSQV 719
               ++A V A +PPA+  LG++ GFD+ LQD AG GH+ LM ARNQ L +AA++  L++V
Sbjct: 655  NQIKEARVIASSPPAISGLGSSAGFDMELQDHAGAGHDALMAARNQLLALAAENPELTRV 714

Query: 720  RPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQGL 779
            R NGL+D PQ Q++ID  KA ALGV + DIN+TL  A GSSYVNDF+DRGRVKKVY+Q  
Sbjct: 715  RHNGLDDSPQLQIDIDQRKAQALGVAIDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAA 774

Query: 780  PGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGHS 839
               RM P+D+  WYVRN  G MVPFS+FA   W  GSP+L RYNG  A+EI+G  APG S
Sbjct: 775  APYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVS 834

Query: 840  TGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESWS 899
            TG AM  +E+L K+LP G G+ WT +SY+ERLSG+QAPALYA+SLL+VFLCLAALYESWS
Sbjct: 835  TGTAMDIMESLVKQLPNGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWS 894

Query: 900  IPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKELHEQG 959
            +P +VMLVVPLG+IGAL+AT MRGL NDVYFQVGLLT IGL+AKNAILIVEFA E++++G
Sbjct: 895  VPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKG 954

Query: 960  RSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITATVL 1019
              L +A + ACR RLRPI+MTSLAF+ GV+P+A STGAGSG QHA+GTGV+GGMI+AT+L
Sbjct: 955  HDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATIL 1014

Query: 1020 AIFWVPLFFVTV 1031
            AI++VPLFFV V
Sbjct: 1015 AIYFVPLFFVLV 1026