Pairwise Alignments
Query, 1053 a.a., RND efflux system, inner membrane transporter CmeB from Pseudomonas fluorescens FW300-N1B4
Subject, 1049 a.a., multidrug efflux system protein (NCBI) from Escherichia coli BW25113
Score = 1373 bits (3554), Expect = 0.0
Identities = 697/1044 (66%), Positives = 845/1044 (80%), Gaps = 8/1044 (0%)
Query: 1 MSKFFIDRPIFAWVIALVIMLVGALSILKLPINQYPSIAPPAIAISVTYPGASAQTVQDT 60
M FFIDRPIFAWVIA++IML G L+ILKLP+ QYP+IAPPA+ IS +YPGA A+TVQDT
Sbjct: 1 MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVTISASYPGADAKTVQDT 60
Query: 61 VVQVIEQQLNGIDNLRYVSSESNSDGNMTITATFEQGTNSDTAQVQVQNKLNLATPLLPQ 120
V QVIEQ +NGIDNL Y+SS S+S G + IT TFE GT++D AQVQVQNKL LA PLLPQ
Sbjct: 61 VTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQ 120
Query: 121 EVQQQGIRVTKSVKNFLMVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVGDFQVFGA 180
EVQQQG+ V KS +FLMV+GV++ DG+MT++D+S+Y+ +NM+D ISRT+GVGD Q+FG+
Sbjct: 121 EVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVGDVQLFGS 180
Query: 181 QYAMRIWLDPAKLNNYNLTPVDVKTAIAAQNVQVSSGQLGGLPALPGQQLNATIIGKTRL 240
QYAMRIW++P +LN + LTPVDV TAI AQN QV++GQLGG P + GQQLNA+II +TRL
Sbjct: 181 QYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRL 240
Query: 241 QTAEQFKAILLKVNKDGSQVRVGDVAEVGLGGENYSISAQFNGAPASGLAVKLANGANAL 300
+ E+F ILLKVN+DGS+V + DVA++ LGGENY I A+FNG PASGL +KLA GANAL
Sbjct: 241 TSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIAEFNGQPASGLGIKLATGANAL 300
Query: 301 DTAKALRNTIDTLKPFFPEGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQ 360
DTA A+R + ++PFFP G+++V+PYDTTP V SI VV+TLVEAI+LVFLVM+LFLQ
Sbjct: 301 DTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQ 360
Query: 361 NFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
NFRAT+I T+ VPVVLLGTF +LAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM
Sbjct: 361 NFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVM 420
Query: 421 SEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMAL 480
+EEGL PKEAT+KSMGQIQGALVGIA+VLSAV +PMAFF GSTG IY+QFSITIVSAMAL
Sbjct: 421 AEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMAL 480
Query: 481 SVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRSFDRGVKSYERGVGNILTHKAP 540
SVLVALI TPALCATMLK I KG+HG K+GFFGWFNR F++ Y VG IL
Sbjct: 481 SVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRMFEKSTHHYTDSVGGILRSTGR 540
Query: 541 YLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTPAGSSSQRTQVVVDEMREFLLR 600
YL+ YLIIVVGM +LF R+P++FLP+EDQGV VQ PAG++ +RTQ V++E+ + L
Sbjct: 541 YLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLT 600
Query: 601 PSSEGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPWEER-NADNSVFKLAARAQQHF 659
E + V SVF V GF FAGRGQ++G+AF+ LK W +R +N V + RA + F
Sbjct: 601 K-----EKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEENKVEAITMRATRAF 655
Query: 660 FTFRDAMVFAFAPPAVLELGNATGFDVFLQDRAGIGHEKLMEARNQFLGMAAQ-SKVLSQ 718
+DAMVFAF PA++ELG ATGFD L D+AG+GHEKL +ARNQ L AA+ +L+
Sbjct: 656 SQIKDAMVFAFNLPAIVELGTATGFDFELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTS 715
Query: 719 VRPNGLNDEPQYQLEIDDEKASALGVTLTDINNTLSIALGSSYVNDFIDRGRVKKVYIQG 778
VRPNGL D PQ++++ID EKA ALGV++ DIN TL A G SYVNDFIDRGRVKKVY+
Sbjct: 716 VRPNGLEDTPQFKIDIDQEKAQALGVSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMS 775
Query: 779 LPGARMSPEDLKKWYVRNSAGTMVPFSSFAKGEWIYGSPKLARYNGVEAMEILGAPAPGH 838
RM P+D+ WYVR + G MVPFS+F+ W YGSP+L RYNG+ +MEILG APG
Sbjct: 776 EAKYRMLPDDIGDWYVRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGK 835
Query: 839 STGEAMAEVEALAKKLPAGVGISWTGLSYEERLSGSQAPALYALSLLMVFLCLAALYESW 898
STGEAM +E LA KLP GVG WTG+SY+ERLSG+QAP+LYA+SL++VFLCLAALYESW
Sbjct: 836 STGEAMELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESW 895
Query: 899 SIPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEL-HE 957
SIP +VMLVVPLG+IGAL+A + RGL+NDVYFQVGLLTTIGL+AKNAILIVEFAK+L +
Sbjct: 896 SIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDK 955
Query: 958 QGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGAGSGSQHAIGTGVIGGMITAT 1017
+G+ L +A ++A RMRLRPI+MTSLAF+LGV+PL ISTGAGSG+Q+A+GTGV+GGM+TAT
Sbjct: 956 EGKGLIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTAT 1015
Query: 1018 VLAIFWVPLFFVTVSSMGQRKVAD 1041
VLAIF+VP+FFV V RK D
Sbjct: 1016 VLAIFFVPVFFVVVRRRFSRKNED 1039