Pairwise Alignments

Query, 335 a.a., RNA polymerase sigma factor RpoS from Pseudomonas fluorescens FW300-N1B4

Subject, 330 a.a., RNA polymerase sigma factor (NCBI) from Escherichia coli BW25113

 Score =  410 bits (1054), Expect = e-119
 Identities = 210/277 (75%), Positives = 237/277 (85%)

Query: 59  RALDATQLYLNEIGFSPLLSPEEEVHFARLSQSGDPAGRKRMIESNLRLVVKIARRYVNR 118
           R LDATQLYL EIG+SPLL+ EEEV+FAR +  GD A R+RMIESNLRLVVKIARRY NR
Sbjct: 53  RVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLVVKIARRYGNR 112

Query: 119 GLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHVV 178
           GL+LLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIH+V
Sbjct: 113 GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRLPIHIV 172

Query: 179 KELNVYLRAARELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSLGPDSDK 238
           KELNVYLR AREL+ KLDHEPS EEIA  L+KPV +V RML LNER++SVD  LG DS+K
Sbjct: 173 KELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEK 232

Query: 239 TLLDTLTDDRPTDPCELLQDDDLSQSIDQWLSELTDKQREVVIRRFGLRGHESSTLEDVG 298
            LLD L D++   P +  QDDD+ QSI +WL EL  KQREV+ RRFGL G+E++TLEDVG
Sbjct: 233 ALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVG 292

Query: 299 LEIGLTRERVRQIQVEGLKRLREILEKNGLSSESLFQ 335
            EIGLTRERVRQIQVEGL+RLREIL+  GL+ E+LF+
Sbjct: 293 REIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFR 329