Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 626 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

 Score =  298 bits (763), Expect = 4e-85
 Identities = 163/384 (42%), Positives = 238/384 (61%), Gaps = 13/384 (3%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           FA+  L+  ++ A+ A GY EP+ +QQ++IP ++ G D++  AQTGTGKT  FALPIL R
Sbjct: 3   FASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 68  IDP----------AKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGP 117
           + P            R+P+ L+L PTRELA QV  +F+ YA+ +  V+   ++GG  M P
Sbjct: 63  LFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSA-CIFGGVGMNP 121

Query: 118 QLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAL 177
           Q++A+  G  ++VA PGRL D   +    L+ V  LVLDEAD ML +GF+ D++ +   L
Sbjct: 122 QVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLARL 181

Query: 178 PATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVL 237
           PA RQ +LFSAT  Q I A+A + L +P+ +++     TV  IEQ    + A  K + + 
Sbjct: 182 PAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALLA 241

Query: 238 SLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLD 297
            L+    ++ +++F RTK     LA  L+  G  A A++G+ +QN R + +   K G + 
Sbjct: 242 HLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSVR 301

Query: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357
           I+VATD+AARGLD+ ++ HV N ++P   E YVHRIGRTGRAGR G A+ LV P E ++L
Sbjct: 302 ILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361

Query: 358 QVIERVTGQKVAEVRLP--DAQAV 379
           + IER+T QK+A+  L   DA AV
Sbjct: 362 KSIERMTKQKIADGDLMGFDASAV 385