Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score =  302 bits (774), Expect = 2e-86
 Identities = 159/373 (42%), Positives = 238/373 (63%), Gaps = 11/373 (2%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           FA+  L+  ++ A+ A GY +P+ +QQ++IP ++ G D++  AQTGTGKT  FALPIL R
Sbjct: 3   FASLGLSEALVRAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 68  IDPA----------KREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGP 117
           + PA           R+P+ L+L PTRELA QV  +F+ YA+ +P V+   ++GG  M P
Sbjct: 63  LFPAGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSA-CIFGGVGMNP 121

Query: 118 QLKAIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAL 177
           Q++AI  G  ++VA PGRL D   + +  LA V  LVLDEAD ML +GF+ D++ +   L
Sbjct: 122 QIQAIAKGVDVLVACPGRLLDLAGQGKVDLAHVEILVLDEADRMLDMGFIHDVKKVLARL 181

Query: 178 PATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVL 237
           PA RQ +LFSAT  + I  +A++ L +P+ +++     TV  IEQ    + A  K + + 
Sbjct: 182 PAKRQNLLFSATFSKDITDLADKLLHNPERIEVTPPNTTVERIEQRVYRLPASHKRALLA 241

Query: 238 SLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLD 297
            L+ +  ++ +++F RTK     LA  LE +G  AAA++G+ +QN R + +   K   + 
Sbjct: 242 HLITLGAWEQVLVFTRTKHGANRLAEYLEKQGLTAAAIHGNKSQNARTKALADFKANSVR 301

Query: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRML 357
           ++VATD+AARGLD+ ++ HV N ++P   E YVHRIGRTGRAGR G A+ LV P E ++L
Sbjct: 302 VLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRIGRTGRAGRSGEAISLVAPDEEKLL 361

Query: 358 QVIERVTGQKVAE 370
           + IERVT Q++A+
Sbjct: 362 KSIERVTKQRIAD 374