Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 567 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  370 bits (950), Expect = e-107
 Identities = 215/560 (38%), Positives = 317/560 (56%), Gaps = 20/560 (3%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           FA   ++  IL AV   GY +PS IQ QSIP+++ GHD+IGQAQTGTGKTA+F +PI+ R
Sbjct: 7   FADLGISAEILQAVEGMGYTQPSEIQAQSIPLMLEGHDVIGQAQTGTGKTASFGIPIVDR 66

Query: 68  IDPAKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKAIRNGAQ 127
           +D + ++PQALIL PTRELA+QV       AK   G+   A+YGG  +  Q++ ++ G Q
Sbjct: 67  VDSSSKQPQALILCPTRELAVQVEGEITKLAKYKKGIFSTAIYGGEAIDRQIRTLKRGVQ 126

Query: 128 IVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATRQTVLFS 187
           IVV TPGR+ DH+ R    L TV  +VLDEADEML +GF +D+E +   +P  RQT+ FS
Sbjct: 127 IVVGTPGRVMDHMNRGTLKLDTVKTIVLDEADEMLDMGFREDIETVLSQMPEDRQTIFFS 186

Query: 188 ATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLEVEDFDA 247
           AT+ + I  +  ++  +P+ VKIQ K  TV  I Q +  V    K   +  L+ +  F+ 
Sbjct: 187 ATMAKPIMDLTRKYQTNPEIVKIQRKELTVENISQVYYEVKPPLKMELITRLINIHQFNL 246

Query: 248 LIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVATDVAAR 307
            ++F  TK+AT ++   L A+G  A AL+GD++Q QR++V+   + G   ++VATDVAAR
Sbjct: 247 GVVFCNTKRATDEVTEGLIARGIMAEALHGDLSQAQRDKVMNKFRKGHCTVLVATDVAAR 306

Query: 308 GLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRM-LQVIERVTGQ 366
           G+DV  +  VFN D+P D E YVHRIGRTGRAGR G A+  +T R+    L+ +ER    
Sbjct: 307 GIDVDNVEVVFNYDLPLDEEYYVHRIGRTGRAGRSGMAISFITGRKDIFRLKDLERYIKT 366

Query: 367 KVAEVRLPDAQAVLDAR----IKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRALAA 422
            + ++  P    ++D +    +K++T SLS    D +     L   L   +     AL  
Sbjct: 367 TLTKMNPPSVAEMIDQKKDQLVKEVTTSLSK-EEDNQVFEAALGQMLAEGLSMDQIALGL 425

Query: 423 ALLRKATNAQALTLAAIEKERPLVPNNAPRGDRPERTGDRPDRGDRERRAPVPLAE--GR 480
             L+   + Q L+    +     +  +  RG+R  R  DR +RG R+ R   P     GR
Sbjct: 426 VKLQMGKSIQELSDMNFDLN---LGRDRDRGERGGRGRDRFERGGRKGRGDRPAGRKGGR 482

Query: 481 ARCRTA---------LGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDG 531
            R R           LG +D I   +++GAI  E G++   IG I + D+FS V++P   
Sbjct: 483 ERGRREANMSRLFLNLGKKDRIRPNDIVGAIAGEAGISGRLIGGIDIFDNFSFVDVPSKD 542

Query: 532 LEKLLTKLKDTRVAGKQLKL 551
              ++  +K   + GK + +
Sbjct: 543 ASHVINVMKRNTIKGKPVNM 562