Pairwise Alignments

Query, 557 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Pseudomonas fluorescens FW300-N1B4

Subject, 416 a.a., Superfamily II DNA and RNA helicases from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  296 bits (758), Expect = 1e-84
 Identities = 160/391 (40%), Positives = 240/391 (61%), Gaps = 10/391 (2%)

Query: 8   FAAFNLNPNILAAVIATGYEEPSAIQQQSIPIIMAGHDMIGQAQTGTGKTAAFALPILHR 67
           F    + P IL A+   GY+EP++IQ Q+IP I+ G D++G AQTGTGKTAAFA+PI+  
Sbjct: 3   FKDLRIIPPILKALEDKGYDEPTSIQAQAIPHILEGRDVLGCAQTGTGKTAAFAIPIIQH 62

Query: 68  ID--PAKREPQA----LILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLKA 121
           I   P   EP A    LI+ PTRELA+Q+    + YAK    V+   ++GG   G Q+  
Sbjct: 63  IHEAPYANEPWAKIRSLIVTPTRELAIQIGENIDEYAKNT-NVSHTVIFGGVKQGAQVAQ 121

Query: 122 IRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKALPATR 181
           ++ G  I+VATPGRL D + +    L  ++  VLDEAD ML +GF++D++ + K LP  R
Sbjct: 122 LKKGVHILVATPGRLLDLIDQGHISLKAIDLFVLDEADRMLDMGFINDIKKLLKILPKKR 181

Query: 182 QTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLLE 241
           Q++ FSAT+P +I  +++  L +PQ V++   + T   I+Q     +   K S ++ +LE
Sbjct: 182 QSLFFSATMPDNILQLSKEILDNPQKVEVTPVSSTAETIQQYIYYTNKSSKKSLLIHILE 241

Query: 242 VEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVVA 301
            E  D +++F RTK     +   L+ K  KAAA++GD AQNQR+RV+   KD +L ++VA
Sbjct: 242 KEGMDQVLLFSRTKHGADRIVRDLKKKHIKAAAIHGDKAQNQRQRVLSDFKDNKLRVLVA 301

Query: 302 TDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVIE 361
           TD+AARG+D+ ++ +V N D+P  PE+Y+HRIGR+GRAG EG A+ L  P E   ++ IE
Sbjct: 302 TDIAARGIDIDKLKYVINFDIPDTPETYIHRIGRSGRAGEEGTAISLCEPEENADVKAIE 361

Query: 362 RVTGQKVAEVR---LPDAQAVLDARIKKLTN 389
           ++  + +  +     P     + A+ KK  N
Sbjct: 362 KLANKNITVISDHPFPQTDKPMTAQEKKEFN 392