Pairwise Alignments

Query, 389 a.a., Arabinose efflux permease from Pseudomonas fluorescens FW300-N1B4

Subject, 389 a.a., putative MFS transporter, inner membrane protein from Escherichia coli BL21

 Score =  324 bits (831), Expect = 2e-93
 Identities = 174/382 (45%), Positives = 255/382 (66%)

Query: 5   LLALAVAAFGIGTTEFVIMGLLPDVARDLAVSIPHAGLLITGYALGVVFGAPILAVGTAN 64
           LLALA+ AFGIGTTEF  MGLLP +AR + VSIP AG+LI+ YA+GV+ GAP++ +  ++
Sbjct: 7   LLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSH 66

Query: 65  MPRKATLLGMTLMFILGNILCALAPNYATLMAARVITALCHGAFFGIGSVVAAGLVAPNK 124
             R++ L+ +  +F LGN+L A+AP+Y TLM +R++T+L HGAFFG+GSVVAA +V  +K
Sbjct: 67  RARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHK 126

Query: 125 RAQAIAMMFTGLTLANVLGVPLGTALGQYAGWRSTFWAVSVIGVIAAIAQWVWLPKEIPM 184
           +A A+A MF GLTLAN+ GVP  T LG+  GWR +F A + +GVI+ ++ +  LPK    
Sbjct: 127 QASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAG 186

Query: 185 DKANLASEFKVLGKVNVLLALGMSVLASTSLFSVFTYIAPILQDITGVSPHGVTIMLLLF 244
            +  +  E  VL +  VL AL  +VL + ++F+++TYI+P+LQ IT  +P  VT ML+L 
Sbjct: 187 ARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLI 246

Query: 245 GVGLTAGSMLGGRLADSRLLPSLVGMALAVVVVLAAFSQTSHSVIPAAITLVLWGIFAFA 304
           GVG + G+ LGG+LAD  +  +L G  L ++V++ A    + +   AAI++V+WG   FA
Sbjct: 247 GVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFA 306

Query: 305 LCPILQLLIIDQAHEAPNLGSTLNQSAFNLGNAAGAWIGGLVVASGADLADLPWTGALVS 364
           + P LQ+ ++  A EAP L S++N  AFNLGNA GA  GG V+++G   + +P  GA+V+
Sbjct: 307 VVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVA 366

Query: 365 GLTVLTALFFIYLQRRSAVAVN 386
           GL +L        Q  +    N
Sbjct: 367 GLALLLVFMSARKQPETVCVAN 388